Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30782
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    84   9e-18
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    80   1e-16
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   1.8  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   1.8  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   2.4  
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom...    26   2.4  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    25   5.6  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   7.3  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   7.3  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    24   9.7  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    24   9.7  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 84.2 bits (199), Expect = 9e-18
 Identities = 38/72 (52%), Positives = 51/72 (70%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 216
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 217 ERSRLCYRKKTV 252
           E +RL + KKTV
Sbjct: 61  EFARLSHNKKTV 72



 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 22/30 (73%), Positives = 23/30 (76%)
 Frame = +3

Query: 252 ERVYGGVLCHKCVKQRIVRAFLIEEQKIVK 341
           +R YGG L    VK RIVRAFLIEEQKIVK
Sbjct: 73  QRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 80.2 bits (189), Expect = 1e-16
 Identities = 36/72 (50%), Positives = 50/72 (69%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 216
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L+GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 217 ERSRLCYRKKTV 252
           E +RL + +K V
Sbjct: 61  EFARLSHNQKKV 72



 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 22/30 (73%), Positives = 23/30 (76%)
 Frame = +3

Query: 252 ERVYGGVLCHKCVKQRIVRAFLIEEQKIVK 341
           +R YGG L    VK RIVRAFLIEEQKIVK
Sbjct: 73  QRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 58  RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 165
           RR  + N KS+++R    PG  L  +   KPK   R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 308 SDNALLDTFMAEDTTIN 258
           SDNA +DT ++ED TIN
Sbjct: 83  SDNAAIDTDISEDETIN 99


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 409 LSPKIHFVAFFADLVLACCALRTFTIFCSS 320
           L   IH  A   +  L+CC   T  I+CSS
Sbjct: 9   LCKAIHLKAIIEEPKLSCCHCETCRIWCSS 38


>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +1

Query: 58  RRRLSYNTKSN-QRRIVRTPGGRLVY 132
           R+  SY T +   +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 3   LHIFYFIFQLENGAAAYIQATTVVQHKIKSKKNSKDTG--WPLGLSVCK 143
           L +  ++ +  + AAA+ Q T + QH  +   + + TG   P+   VCK
Sbjct: 77  LQVLLYLVRDHDPAAAFKQQTELAQHLYREFSSGRCTGVHLPVLFIVCK 125


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 273 GHHHKHVHCFLTVAKTGTFSRSS 205
           GHHH H H ++T    G + + S
Sbjct: 741 GHHHHHHHHYITGHVYGGYHKHS 763


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 270 HHHKHVHCFLTVAKTGTFSRSSWLDTTEFAL 178
           HH   + C+        F  S+++D  EF+L
Sbjct: 890 HHQNLLSCYYLHLSKKLFEESAYIDALEFSL 920


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 163 RCGQCKSKLRGIQPARPAERSR 228
           RC +CK   +G    RP  R R
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCR 362


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 21  IFQLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCK 143
           I Q E G   Y ++   +Q  +K K    D+   LGL++CK
Sbjct: 16  IDQFEKGQ--YSKSLKTIQSVLKKKPKHPDSVALLGLNLCK 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,029
Number of Sequences: 5004
Number of extensions: 33097
Number of successful extensions: 87
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)