Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30782
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)          49   2e-06
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)                 30   0.80 
SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)                29   1.4  
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   2.4  
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               28   3.2  
SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)                   27   7.5  

>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
          Length = 58

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 22/34 (64%), Positives = 25/34 (73%)
 Frame = +3

Query: 237 P*ENSERVYGGVLCHKCVKQRIVRAFLIEEQKIV 338
           P +   R YGG  C  CVK+RI+RAFLIEEQKIV
Sbjct: 12  PQKTVSRAYGGSRCAACVKERIIRAFLIEEQKIV 45


>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
          Length = 299

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 54  IQATTVVQHKIKSKKNSKDTGWPLGLSV 137
           I     VQH  K+KK + DT +P+G++V
Sbjct: 45  ISGEYAVQHSCKNKKETIDTDYPIGMAV 72


>SB_38389| Best HMM Match : PspA_IM30 (HMM E-Value=0.87)
          Length = 339

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 80  VLYDSRRLNVSRCTIFKLKYEIKYM 6
           VLYD   +NV  C +FK+ Y++ Y+
Sbjct: 287 VLYDMPYVNVKYCRVFKVLYDMPYV 311



 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 80  VLYDSRRLNVSRCTIFKLKYEIKYM 6
           VLYD   +NV  C +FK+ Y++ Y+
Sbjct: 304 VLYDMPYVNVKYCRVFKVLYDMPYV 328


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 61  RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 150
           RR++  T SN  R++RTP G+ ++  VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187


>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +3

Query: 30  LENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCKKAQEDPKVWSVQEQTPW 194
           ++  ++AYI  T+  + K+K+K     T  P    V K A E+ K  + +++ P+
Sbjct: 496 VKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQKKPY 550


>SB_22814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 142 LHTDKPSGHPVSLLFFFDLI 83
           LHT +P+GHP  ++  FD I
Sbjct: 5   LHTTEPTGHPCHIVCCFDAI 24


>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 284 MCQATHCQSLPH*RTKNCEGPQGTTGEH*VGKEGYKVNFR 403
           +CQ  HC  LP  R K+C+ P   TG     ++ Y+   R
Sbjct: 115 VCQDDHCACLPCWRGKSCDQPD-LTGPPEFEQKEYEAEIR 153


>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
          Length = 857

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 260 LWWCPLP*MCQATHCQSLPH*RTKNCEGPQGTT 358
           LW  P+P   Q + C+S P   T   E P  TT
Sbjct: 229 LWRKPVPKTDQQSECESSPGANTDRLESPARTT 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,479,864
Number of Sequences: 59808
Number of extensions: 255049
Number of successful extensions: 732
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)