Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30782
         (459 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L38941-1|AAC41916.1|  117|Homo sapiens ribosomal protein L34 pro...    90   3e-18
CR542242-1|CAG47038.1|  117|Homo sapiens RPL34 protein.                86   6e-17
CR542232-1|CAG47028.1|  117|Homo sapiens RPL34 protein.                86   6e-17
BC106009-1|AAI06010.1|  117|Homo sapiens ribosomal protein L34 p...    86   6e-17
BC070208-1|AAH70208.1|  117|Homo sapiens ribosomal protein L34 p...    86   6e-17
BC001773-1|AAH01773.1|  117|Homo sapiens ribosomal protein L34 p...    86   6e-17
AB061832-1|BAB79470.1|  117|Homo sapiens ribosomal protein L34 p...    86   6e-17
AB007181-1|BAA25840.1|   45|Homo sapiens ribosomal protein L34 p...    60   4e-09
BC037582-1|AAH37582.1|  349|Homo sapiens ATXN7L2 protein protein.      30   3.3  
BC036849-1|AAH36849.1|  580|Homo sapiens ataxin 7-like 2 protein.      30   3.3  
AL355145-2|CAI22938.1|  349|Homo sapiens ataxin 7-like 2 protein.      30   3.3  
AL355145-1|CAI22937.1|  722|Homo sapiens ataxin 7-like 2 protein.      30   3.3  

>L38941-1|AAC41916.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score = 90.2 bits (214), Expect = 3e-18
 Identities = 44/75 (58%), Positives = 52/75 (69%), Gaps = 2/75 (2%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 210
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  KLRG++P R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGKLRGVRPVR 60

Query: 211 PAERSRLCYRKKTVN 255
           P    RL   KK V+
Sbjct: 61  PKVLMRLSKTKKHVS 75



 Score = 48.8 bits (111), Expect = 9e-06
 Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +3

Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQK-IVKVL 347
           R YGG +C KCV+ RI RAFLIEEQK IVKVL
Sbjct: 76  RAYGGSMCAKCVRDRIKRAFLIEEQKIIVKVL 107


>CR542242-1|CAG47038.1|  117|Homo sapiens RPL34 protein.
          Length = 117

 Score = 85.8 bits (203), Expect = 6e-17
 Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 210
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 211 PAERSRLCYRKKTVN 255
           P    RL   KK V+
Sbjct: 61  PKVLMRLSKTKKHVS 75



 Score = 48.8 bits (111), Expect = 9e-06
 Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +3

Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 347
           R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 76  RAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107


>CR542232-1|CAG47028.1|  117|Homo sapiens RPL34 protein.
          Length = 117

 Score = 85.8 bits (203), Expect = 6e-17
 Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 210
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 211 PAERSRLCYRKKTVN 255
           P    RL   KK V+
Sbjct: 61  PKVLMRLSKTKKHVS 75



 Score = 48.8 bits (111), Expect = 9e-06
 Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +3

Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 347
           R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 76  RAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107


>BC106009-1|AAI06010.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score = 85.8 bits (203), Expect = 6e-17
 Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 210
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 211 PAERSRLCYRKKTVN 255
           P    RL   KK V+
Sbjct: 61  PKVLMRLSKTKKHVS 75



 Score = 48.8 bits (111), Expect = 9e-06
 Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +3

Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 347
           R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 76  RAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107


>BC070208-1|AAH70208.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score = 85.8 bits (203), Expect = 6e-17
 Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 210
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 211 PAERSRLCYRKKTVN 255
           P    RL   KK V+
Sbjct: 61  PKVLMRLSKTKKHVS 75



 Score = 48.8 bits (111), Expect = 9e-06
 Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +3

Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 347
           R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 76  RAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107


>BC001773-1|AAH01773.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score = 85.8 bits (203), Expect = 6e-17
 Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 210
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 211 PAERSRLCYRKKTVN 255
           P    RL   KK V+
Sbjct: 61  PKVLMRLSKTKKHVS 75



 Score = 48.8 bits (111), Expect = 9e-06
 Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +3

Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 347
           R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 76  RAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107


>AB061832-1|BAB79470.1|  117|Homo sapiens ribosomal protein L34
           protein.
          Length = 117

 Score = 85.8 bits (203), Expect = 6e-17
 Identities = 42/75 (56%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
 Frame = +1

Query: 37  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 210
           MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG C  +LRG++  R
Sbjct: 1   MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60

Query: 211 PAERSRLCYRKKTVN 255
           P    RL   KK V+
Sbjct: 61  PKVLMRLSKTKKHVS 75



 Score = 48.8 bits (111), Expect = 9e-06
 Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +3

Query: 255 RVYGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 347
           R YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 76  RAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107


>AB007181-1|BAA25840.1|   45|Homo sapiens ribosomal protein L34
           protein.
          Length = 45

 Score = 60.1 bits (139), Expect = 4e-09
 Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
 Frame = +1

Query: 46  RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CG 171
           RLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK  K P+  CG
Sbjct: 1   RLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACG 44


>BC037582-1|AAH37582.1|  349|Homo sapiens ATXN7L2 protein protein.
          Length = 349

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 391 FVAFFADLVLACCAL--RTFTIFCSSMRKALTMRCLTHLWQRTPP 263
           F  F + LV   C +  R    FCS++   L     TH+W++ PP
Sbjct: 40  FCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSTHMWKKIPP 84


>BC036849-1|AAH36849.1|  580|Homo sapiens ataxin 7-like 2 protein.
          Length = 580

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 391 FVAFFADLVLACCAL--RTFTIFCSSMRKALTMRCLTHLWQRTPP 263
           F  F + LV   C +  R    FCS++   L     TH+W++ PP
Sbjct: 413 FCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSTHMWKKIPP 457


>AL355145-2|CAI22938.1|  349|Homo sapiens ataxin 7-like 2 protein.
          Length = 349

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 391 FVAFFADLVLACCAL--RTFTIFCSSMRKALTMRCLTHLWQRTPP 263
           F  F + LV   C +  R    FCS++   L     TH+W++ PP
Sbjct: 40  FCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSTHMWKKIPP 84


>AL355145-1|CAI22937.1|  722|Homo sapiens ataxin 7-like 2 protein.
          Length = 722

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 391 FVAFFADLVLACCAL--RTFTIFCSSMRKALTMRCLTHLWQRTPP 263
           F  F + LV   C +  R    FCS++   L     TH+W++ PP
Sbjct: 413 FCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSTHMWKKIPP 457


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,142,528
Number of Sequences: 237096
Number of extensions: 1328605
Number of successful extensions: 7256
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7239
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)