Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30781
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   1.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   1.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   1.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.9  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.5  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.5  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.5  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   7.7  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -2

Query: 447 EYHLERL---RRRADTDHSVVLSIKII*QWF 364
           E+H  R    RRR +  H++VLS + I  WF
Sbjct: 251 EFHYNRYLTRRRRIEIAHTLVLSERQIKIWF 281


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -2

Query: 447 EYHLERL---RRRADTDHSVVLSIKII*QWF 364
           E+H  R    RRR +  H++VLS + I  WF
Sbjct: 251 EFHYNRYLTRRRRIEIAHTLVLSERQIKIWF 281


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -2

Query: 447 EYHLERL---RRRADTDHSVVLSIKII*QWF 364
           E+H  R    RRR +  H++VLS + I  WF
Sbjct: 251 EFHYNRYLTRRRRIEIAHTLVLSERQIKIWF 281


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -2

Query: 297 VGSRSFHTM*WHPICAITELAISAKKNKDIFPIV 196
           +G + + ++ WH    +  + +SA   KD  P++
Sbjct: 465 MGIQPYDSLLWHTWMPVMRICVSAWNPKDCDPLI 498


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 495 HQHRFLLHNKYDSRKSKTY 551
           HQH FL  NKY       Y
Sbjct: 126 HQHHFLHENKYQLEVDSGY 144


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 495 HQHRFLLHNKYDSRKSKTY 551
           HQH FL  NKY       Y
Sbjct: 126 HQHHFLHENKYQLEVDSGY 144


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 495 HQHRFLLHNKYDSRKSKTY 551
           HQH FL  NKY       Y
Sbjct: 126 HQHHFLHENKYQLEVDSGY 144


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 355 PSPEPLSNYLDAQYYGVISIGTPP 426
           P P P+  +  A+Y+   + G PP
Sbjct: 163 PPPPPVYTHHYARYHPYPNFGVPP 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,418
Number of Sequences: 336
Number of extensions: 4043
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)