Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30781
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    28   1.6  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   3.6  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    26   4.8  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    26   4.8  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   4.8  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   6.3  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    26   6.3  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 379 YLDAQ-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 483
           Y DA  Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 70  YTDAGGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 486 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 382
           +FG + E GG G     +R RR +D  H   +S++
Sbjct: 95  MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 349 TGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSKKCHYTNIAF 510
           +GP  +  S+ L A+Y+ VI  G+P +S      +G S ++  SK  +Y  + F
Sbjct: 204 SGPDVQKASD-LCAKYFAVIPDGSPLKSAPTKISSGESRVY--SKGTNYFCLGF 254


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 688 SPGSDTASANVWRRTLSPPTVTSSVER---KPERLPEPYFIANWVPFATY 548
           SP SDT S N+    LSP +   S  R   +P R  +   ++N +  A +
Sbjct: 143 SPASDTHSQNIHDEALSPSSFRVSRSRYFPRPHRSSKNLSVSNRLQLAVF 192


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 701 GHEGKPGLRHGLGERL 654
           G EGKPG+  G+GE L
Sbjct: 72  GTEGKPGVSRGVGEEL 87


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 724 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSV 614
           PR+    A++K +  S TAS      ++SP +  SSV
Sbjct: 96  PRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSV 132


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 211 IFI-FFGADRQLRNGTYRVPLHRM 279
           IF+ + GA+R LR G Y  P H M
Sbjct: 94  IFVPYTGANRTLRAGNYEYPFHVM 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,987
Number of Sequences: 5004
Number of extensions: 62402
Number of successful extensions: 173
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)