Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30781
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36362| Best HMM Match : Asp (HMM E-Value=0) 120 2e-27
SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09) 39 0.005
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 32 0.41
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0) 31 0.72
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_51749| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_51748| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_33099| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39) 28 6.7
SB_48315| Best HMM Match : GASA (HMM E-Value=1.8) 28 6.7
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 28 6.7
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11) 28 8.9
>SB_36362| Best HMM Match : Asp (HMM E-Value=0)
Length = 326
Score = 120 bits (288), Expect = 2e-27
Identities = 56/73 (76%), Positives = 63/73 (86%)
Frame = +3
Query: 510 LLHNKYDSRKSKTYVANGTQFAIKYGSGSLSGFLSTDDVTVGGLKVRRQTFAEAVSEPGL 689
LLH+KYDS KS TY NGT+FAI+YGSGSLSGFLS D V+VGG+ V+ QTFAEA+ EPGL
Sbjct: 82 LLHDKYDSTKSSTYKKNGTEFAIRYGSGSLSGFLSIDTVSVGGIDVKGQTFAEALKEPGL 141
Query: 690 AFVAAKFDGILGM 728
FVAAKFDGILGM
Sbjct: 142 TFVAAKFDGILGM 154
Score = 103 bits (248), Expect = 1e-22
Identities = 52/80 (65%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Frame = +1
Query: 277 MKTARTHFHEVGTELELLRLKYDVT---GPSPEPLSNYLDAQYYGVISIGTPPQSFKVVF 447
M T R EVG +E L KY G PEPL NY+DAQYYG I+IGTPPQ F VVF
Sbjct: 1 MPTPRQSLKEVGISVEQLLGKYGGKYEGGDVPEPLINYMDAQYYGEITIGTPPQKFTVVF 60
Query: 448 DTGSSNLWVPSKKCHYTNIA 507
DTGSSNLWVPSKKC +TNIA
Sbjct: 61 DTGSSNLWVPSKKCSWTNIA 80
>SB_9198| Best HMM Match : Asp (HMM E-Value=2.2e-09)
Length = 278
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/64 (35%), Positives = 32/64 (50%)
Frame = +1
Query: 304 EVGTELELLRLKYDVTGPSPEPLSNYLDAQYYGVISIGTPPQSFKVVFDTGSSNLWVPSK 483
+ G ++ LLR K D + E L YY ++G+PPQ V+ DTGSSN V +
Sbjct: 11 KTGIKIPLLRTKRD-NNVAMENLKGRPGQGYYIASNLGSPPQRINVLVDTGSSNFAVAAS 69
Query: 484 KCHY 495
Y
Sbjct: 70 AHPY 73
>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1752
Score = 32.3 bits (70), Expect = 0.41
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = -1
Query: 706 LAATKASPGSDTASANVWRRTLSPPTVTSSVERKPERLPEPYFIANWVPFATYVLDLRLS 527
+A T+ PG + NV+RRT+SP ER+ E + + ++ W+P D
Sbjct: 1120 IAGTRR-PGLNPPKCNVFRRTMSP------CERQYELAIQRHVLSRWIPRCR--SDGTYE 1170
Query: 526 YLLCSKK-RCWCSGTFWKAPRGWRIR 452
+ C + CWCS K G R R
Sbjct: 1171 PVQCDRGWYCWCSDVDGKELPGTRKR 1196
>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
Length = 1465
Score = 31.5 bits (68), Expect = 0.72
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +3
Query: 531 SRKSKTYVAN-----GTQFAIKYGSGSLSGF-LSTDDVTV---GGLKVRRQTFAEAVSEP 683
+R S Y+ N G F + G++ G + D+T+ GGLK+ Q A+ +P
Sbjct: 537 ARASLVYIGNRRSSYGQTFGFMFRVGTVDGMQVDNGDITIEGEGGLKITTQLTAQGNPKP 596
Query: 684 GLAF 695
G+AF
Sbjct: 597 GVAF 600
>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 265 PLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEPLSNY 381
PL ++ R H ++ T LEL+ K + PS +PL++Y
Sbjct: 112 PLTWNESFRLHIKQIYTNLELITTKQHSSSPSRKPLNSY 150
>SB_51749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Frame = -2
Query: 615 WRG-SRRGC-RSRTLSRTGCHSRRTSWTC-------GCRTCCAAKSDVGVV 490
W G S R C R L++ GC +RR SW GC+T +AK G V
Sbjct: 50 WEGRSVRACWLLRQLAKGGCAARRLSWVTPGFSQSRGCKTTTSAKLACGQV 100
>SB_51748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Frame = -2
Query: 615 WRG-SRRGC-RSRTLSRTGCHSRRTSWTC-------GCRTCCAAKSDVGVV 490
W G S R C R L++ GC +RR SW GC+T +AK G V
Sbjct: 50 WEGRSVRACWLLRQLAKGGCAARRLSWVTPGFSQSRGCKTTTSAKLACGQV 100
>SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 374 DNGSG-EGPVTSYFNLNSSSSVPTS*KWVLAVFIRCNGTLYVPLR 243
D GSG EG V S SSS+ T K +A F NGT +V L+
Sbjct: 156 DEGSGTEGDVESEGVSESSSARSTPVKDTMAEFGHSNGTTFVALK 200
>SB_33099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -1
Query: 622 SSVERKPERLPEPYFIANWVPFATYVLDLRLSYLLCSKKRCWCSGTFWKAP 470
S + K +RL E I T VL L YL+ + C G +W+ P
Sbjct: 439 SELGHKLDRLAEVIIIDECCKVQTKVLPAILGYLVTRPCQVVCCGDYWQVP 489
>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
Length = 1510
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 646 TLSPPTVTSS-VERKPERLPEPYFIANW 566
T SPP V S+ V R P R P+P NW
Sbjct: 1232 TESPPDVASTPVRRYPRRTPKPVRRVNW 1259
>SB_48315| Best HMM Match : GASA (HMM E-Value=1.8)
Length = 340
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 646 TLSPPTVTSS-VERKPERLPEPYFIANW 566
T SPP V S+ V R P R P+P NW
Sbjct: 166 TESPPDVASTPVRRYPRRTPKPVRRVNW 193
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 724 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERKP 602
P S + + ASP T+S + R+ LSP + TSSV P
Sbjct: 3105 PTASSVMFSLDASPVKRTSSPRMSRKPLSPESGTSSVSGDP 3145
>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
Length = 585
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 262 VPLHRMKTARTHFHEVGTELELLRLKYDVTGPSPEP 369
V L +K + ++++ GT+L + +LK T P P P
Sbjct: 247 VLLTDLKPSSLYYYQYGTDLGMSKLKNFTTAPLPNP 282
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,565,871
Number of Sequences: 59808
Number of extensions: 487603
Number of successful extensions: 1697
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1697
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -