Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30780
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   104   9e-24
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   103   2e-23
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   1.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   2.8  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   3.7  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   4.9  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   6.5  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   8.6  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   8.6  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   8.6  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  104 bits (249), Expect = 9e-24
 Identities = 45/81 (55%), Positives = 59/81 (72%)
 Frame = +2

Query: 2   MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 181
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 182 LRHIYIRSPVGVKTVTKIFGG 244
            RHIY+R  VGV  + K++GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGG 81



 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = +1

Query: 256 GVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 402
           G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 86  GMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  103 bits (246), Expect = 2e-23
 Identities = 44/81 (54%), Positives = 59/81 (72%)
 Frame = +2

Query: 2   MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 181
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 182 LRHIYIRSPVGVKTVTKIFGG 244
            RHIY+R  VGV  + K++GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGG 81



 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 26/49 (53%), Positives = 36/49 (73%)
 Frame = +1

Query: 256 GVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 402
           G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RDLDRI
Sbjct: 86  GMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDLDRI 134


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 135 WLRMTLIGSMCVVLPSFVIFTFAHLLESRLSPRSLVGANVWSYTFTFLQVIRQYC-TQGF 311
           WL + LIG MC    S V FT     ++ L+ ++ VG N  ++  T L ++ Q   +   
Sbjct: 180 WLYLILIGRMC----SGVGFTMFLYHKTYLTDKNFVGQNRSTFLAT-LNILAQILGSMAG 234

Query: 312 AIVGGIEA 335
           A +GGI A
Sbjct: 235 AFLGGILA 242


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 187  SYLHSLTCWSQDCHQDLWWAQTYG 258
            S+ + +T + Q CH++LW+ +  G
Sbjct: 1149 SFQNLVTVFCQSCHKELWYQKNAG 1172


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 241 TKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 131
           ++D+G +L+ N+ +N+  TK+ S   I+       QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 117 QLASKSWLRMTLIGSMCVVL 176
           +L SKSWL +  +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 187 SYLHSLTCWSQDCHQDLWWAQTYGV 261
           SY+HSL  W++   Q  W ++  GV
Sbjct: 432 SYVHSLDFWARLLSQAAWLSREKGV 456


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 165 CVVLPSFVIFTFAHLLESRL 224
           C+V  S V+F  AH+ E RL
Sbjct: 176 CIVSSSLVLFDNAHVTEGRL 195


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -2

Query: 390 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 298
           VSS  C E   T     L+ +N ++C+  LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 245  RKRMELHLHISAGHQAVLHAR 307
            R+RM+    + AGHQ++L+ R
Sbjct: 1316 RRRMQRQRELDAGHQSLLNLR 1336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,854
Number of Sequences: 5004
Number of extensions: 35968
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)