Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30780
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   108   2e-24
09_02_0628 + 11364169-11364233,11365135-11365648                       29   2.1  
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    28   5.0  
12_01_0457 + 3601652-3601903,3603399-3603779                           27   6.5  
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    27   6.5  
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    27   8.7  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  108 bits (260), Expect = 2e-24
 Identities = 47/80 (58%), Positives = 62/80 (77%)
 Frame = +2

Query: 14  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 193
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67

Query: 194 YIRSPVGVKTVTKIFGGRKR 253
           Y+R  +GV    KI+GGR+R
Sbjct: 68  YLRQGIGVGGFQKIYGGRQR 87



 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 25/52 (48%), Positives = 38/52 (73%)
 Frame = +1

Query: 247 QTYGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 402
           Q  G  P HFC+SSG+I+R  LQ L+ + +++    GGR++T+QGRRDLD++
Sbjct: 86  QRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQV 137


>09_02_0628 + 11364169-11364233,11365135-11365648
          Length = 192

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +1

Query: 211 WSQDCHQDLWWAQTY-GVTPSH 273
           +  D H   WW+Q Y  +TPSH
Sbjct: 23  YPNDTHDRFWWSQVYIDITPSH 44


>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
            12268367-12268485,12268779-12268969,12269440-12269650,
            12270072-12270309,12270944-12271329,12271933-12271956,
            12271984-12272077,12272341-12272525,12273025-12273255,
            12273665-12273730,12273816-12274034,12274764-12275003,
            12275244-12275423,12276269-12276535,12276612-12276815,
            12276896-12277048
          Length = 1128

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +2

Query: 32   QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIY-IRSP 208
            +D+I+ +    ++    V+VP + +LV TA    L P D  W  +R  A LR  + I  P
Sbjct: 947  EDRILMSDIVFMRAWVNVEVPTYCNLVTTA----LQPQDETWQGMRTTAELRRAHNIPIP 1002

Query: 209  VGVKTVTKIFGGRKRMELHLHISAGHQAVL 298
                +V K    + R    + I A  Q +L
Sbjct: 1003 HNTDSVYKPIERKVRKFNPIEIPAKLQHLL 1032


>12_01_0457 + 3601652-3601903,3603399-3603779
          Length = 210

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +2

Query: 194 YIRSPVGVKTVTKIFGGRKRMELHLHISAG-----HQAVLHARLCNRW 322
           Y+ S     ++ ++FGG     L LH+  G     HQ V+   + +RW
Sbjct: 100 YVPSGTTGVSIMQVFGGGTATTLMLHVYGGDLWYYHQQVVETNIYDRW 147


>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 245 AHQRSW*QS*LQQVSECKYDEGWQHNAHRTNQGHTEPAL*SELSLQDPCAQV 90
           A QR   Q  L  VS     EGWQH++        +  L  E+ ++   AQV
Sbjct: 671 ADQRVSAQCSLAPVSHLHQQEGWQHSSFEHQHHENQNFLEMEVRVRSEMAQV 722


>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 358 HRPELSQQASMPPTIAKPCVQYCLMTCRN 272
           H  +  +  + P TIA+  +QYCL TC N
Sbjct: 116 HPTQDPEATNSPFTIAQLQLQYCLHTCTN 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,646,593
Number of Sequences: 37544
Number of extensions: 254217
Number of successful extensions: 658
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)