Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30780
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          61   6e-10
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_40367| Best HMM Match : ECH (HMM E-Value=3.3)                       29   1.7  
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        29   1.7  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.7  
SB_44881| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 28/49 (57%), Positives = 35/49 (71%)
 Frame = +1

Query: 256 GVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 402
           G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T+QG+RD+DRI
Sbjct: 40  GSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 21/32 (65%), Positives = 29/32 (90%)
 Frame = +2

Query: 74  TGKVKVPEHMDLVKTARFKELAPYDPDWFYVR 169
           +G +K+P+ +DLVKT +FKELAPYDPDW+Y+R
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIR 33


>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +2

Query: 14  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 190
           TV  V   K  KT          ++VP  ++ L  T R  E+  +   W  V+C      
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279

Query: 191 IYIRSPVGVKTVTKIFG 241
           IY+ S +  + V K+ G
Sbjct: 280 IYLHSRLDTQPVNKVIG 296


>SB_40367| Best HMM Match : ECH (HMM E-Value=3.3)
          Length = 231

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 191 IYIRSPVGVKTVTKIFGGRKRMEL-HLHISAGHQAVLHARLCNRWR 325
           +Y  S + +K   ++  G  R ++ + H ++ HQ   +  LC RWR
Sbjct: 32  VYTLSTIHLKREQRLLSGMWRSKIRYRHNTSQHQCCPNKELCTRWR 77


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 237 LVGANVWSYTFTFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 362
           L G    S T TF   ++  C +GF ++G      +S+G+WS
Sbjct: 11  LNGTKTGSLT-TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 237 LVGANVWSYTFTFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 362
           L G    S T TF   ++  C +GF ++G      +S+G+WS
Sbjct: 276 LNGTKTGSLT-TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316



 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 243 GANVWSYTFTFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 362
           G    S T TF   +   C +GF ++G  + +C +SSG+WS
Sbjct: 104 GTKTGSLT-TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142


>SB_44881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 230 KIFGGRKRMELHLHISAGHQAVLHARLCNRW 322
           K FG +KR    L+     +A++H  LC +W
Sbjct: 37  KRFGQKKRKVSRLYFQYAGEALIHDTLCTKW 67


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 25  C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 144
           C   QDC + RC  +KNG  + T A G CK S    + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 270  TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 377
            T+   I   C +G+A++G      +++G WS S+ T
Sbjct: 913  TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,671,551
Number of Sequences: 59808
Number of extensions: 297563
Number of successful extensions: 678
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)