Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30780
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 101 4e-22
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 100 5e-22
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 99 8e-22
At4g16095.1 68417.m02440 disease resistance protein-related cont... 29 1.4
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 29 1.8
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 29 2.4
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ... 27 5.5
At5g16500.1 68418.m01928 protein kinase family protein contains ... 27 7.3
At4g37360.1 68417.m05291 cytochrome P450 family protein cytochro... 27 9.6
At2g38120.1 68415.m04679 amino acid permease, putative (AUX1) id... 27 9.6
At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,... 27 9.6
At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,... 27 9.6
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 101 bits (241), Expect = 4e-22
Identities = 42/80 (52%), Positives = 59/80 (73%)
Frame = +2
Query: 14 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 193
TVKDV + VK AAHLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 194 YIRSPVGVKTVTKIFGGRKR 253
Y+R +GV +I+GG KR
Sbjct: 66 YLRGGLGVGAFRRIYGGSKR 85
Score = 56.4 bits (130), Expect = 1e-08
Identities = 23/49 (46%), Positives = 34/49 (69%)
Frame = +1
Query: 256 GVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 402
G P HFC+SSG +AR LQ L+ + +V+ GGR +T+ G+RDLD++
Sbjct: 87 GSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQV 135
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 100 bits (240), Expect = 5e-22
Identities = 43/80 (53%), Positives = 58/80 (72%)
Frame = +2
Query: 14 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 193
TVKDV VK A+HLK++GK+++P D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65
Query: 194 YIRSPVGVKTVTKIFGGRKR 253
Y+R +GV +I+GG KR
Sbjct: 66 YLRGGLGVGAFRRIYGGSKR 85
Score = 59.3 bits (137), Expect = 1e-09
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = +1
Query: 256 GVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 402
G P HFC+SSG IAR LQ LE + +VE GGR +T+ G+RDLD++
Sbjct: 87 GSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQV 135
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 99 bits (238), Expect = 8e-22
Identities = 41/80 (51%), Positives = 58/80 (72%)
Frame = +2
Query: 14 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 193
TVKDV VK A+HLK++GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 194 YIRSPVGVKTVTKIFGGRKR 253
Y+R +GV +I+GG KR
Sbjct: 66 YLRGGLGVGAFRRIYGGSKR 85
Score = 59.3 bits (137), Expect = 1e-09
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = +1
Query: 256 GVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 402
G P HFC+SSG IAR LQ LE + +VE GGR +T+ G+RDLD++
Sbjct: 87 GSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQV 135
>At4g16095.1 68417.m02440 disease resistance protein-related
contains weak similarity to rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631
Length = 187
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 358 HRPELSQQASMPPTIAKPCVQYCLM 284
H P L Q PP + C++YC M
Sbjct: 86 HMPRLPDQHRFPPNLTNICLRYCCM 110
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 59 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 205
+H + V P D + T F+ ++ ++ WF C+A++ H+ + S
Sbjct: 15 SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 274 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 402
FCRSSG A + + ++ + + K +DG ++L RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186
>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 469
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 212 GVKT-VTKIFGGRKRMELHLHISAGHQA 292
GV+T + K FGGR+R L+ H AG+++
Sbjct: 310 GVRTAILKKFGGRRRFYLNRHRFAGYRS 337
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 23 DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 139
+VE D+ V A K+T + + E VKT F+ELA
Sbjct: 30 NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68
>At4g37360.1 68417.m05291 cytochrome P450 family protein cytochrome
P450 monooxygenase, Arabidopsis thaliana, PID:d1029478
Length = 499
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 269 HISAGHQAVLHARLCNRWRH*SLLRKFRTVVAFSPHKVD 385
HIS G+ V+ A WR+ LR+ + FS H+++
Sbjct: 108 HISYGNSTVVSASYSEHWRN---LRRIGALEIFSAHRLN 143
>At2g38120.1 68415.m04679 amino acid permease, putative (AUX1)
identical to AUX1 GI:1531758 from [Arabidopsis thaliana]
Length = 485
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 135 WLRMTL-IGSMCVVLPSFVIFTFAHLLESRLSPRSLVGANVWSYTFTFLQVIRQYCTQGF 311
+L TL + ++ + + V + F L + SL+ N W L +I Q+ T GF
Sbjct: 269 YLMATLYVFTLTIPSAAAVYWAFGDALLDHSNAFSLMPKNAWRDAAVILMLIHQFITFGF 328
Query: 312 A 314
A
Sbjct: 329 A 329
>At1g43620.2 68414.m05008 UDP-glucose:sterol glucosyltransferase,
putative similar to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 615
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 14 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 190
T+KD EQ IV L +VPE++ LV E P+D W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482
>At1g43620.1 68414.m05007 UDP-glucose:sterol glucosyltransferase,
putative similar to UDP-glucose:sterol
glucosyltransferase [Arabidopsis thaliana] GI:2462931;
contains Pfam profile: PF03033 glycosyltransferase
family 28 N-terminal domain
Length = 615
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 14 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 190
T+KD EQ IV L +VPE++ LV E P+D W + +C+A++ H
Sbjct: 433 TLKDTEQRGIVDRGWGGLGNLA-TEVPENVFLV------EDCPHD--WLFPQCSAVVHH 482
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,024,091
Number of Sequences: 28952
Number of extensions: 198731
Number of successful extensions: 445
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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