Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30778
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 169 4e-43
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 50 4e-07
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 31 0.18
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 0.98
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 3.0
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 27 3.0
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 4.0
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 27 4.0
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 5.2
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 5.2
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 6.9
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 26 6.9
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 9.2
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 9.2
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 25 9.2
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 25 9.2
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 169 bits (411), Expect = 4e-43
Identities = 79/88 (89%), Positives = 85/88 (96%)
Frame = -1
Query: 766 PTAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 587
P+AVGYQPTLATDMG MQERITTTKKGSITSVQA+YVPADDLTDPAPATTFAHLDATTVL
Sbjct: 322 PSAVGYQPTLATDMGAMQERITTTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVL 381
Query: 586 SRAIAELGIYPAVDPLDSTSRIMDPNLL 503
SR+I+ELGIYPAVDPLDS SR+MDP +L
Sbjct: 382 SRSISELGIYPAVDPLDSKSRMMDPRIL 409
Score = 132 bits (320), Expect = 4e-32
Identities = 63/88 (71%), Positives = 75/88 (85%)
Frame = -3
Query: 515 PQFIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQ 336
P+ +G EHYN+A VQ++LQ+YKSLQDIIAILGMDELSE DKLTV RARK+QRFLSQPF
Sbjct: 406 PRILGEEHYNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLTVERARKVQRFLSQPFA 465
Query: 335 VAEVFTGHAGKLVPLEETIKGFSKILAG 252
VAEVFTG G+LV L++TI+ F +IL G
Sbjct: 466 VAEVFTGIEGRLVSLKDTIRSFKEILEG 493
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -2
Query: 249 YDHLPEVAFYMVGPIEEVVAKAETLAK 169
+D LPE AFYMVG I++ V KAE +A+
Sbjct: 495 HDSLPESAFYMVGSIDDAVKKAEKIAQ 521
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 50.0 bits (114), Expect = 4e-07
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -1
Query: 766 PTAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 593
P GY + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 296 PGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQI 355
Query: 592 VLSRAIAELGIYPAVDPLDSTSRIM 518
+ R + IYP ++ L S SR+M
Sbjct: 356 FVDRQLHNNAIYPPINVLPSLSRLM 380
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = -3
Query: 491 YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 345
+N R +++I+Q S+ +II ++G LSE DK+T+ A I+ FL Q
Sbjct: 480 FNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGIIKNDFLQQ 530
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.98
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -1
Query: 715 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 593
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 359 RFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGTMITYLKLH 225
RF+S+ + +A F + K PL+ T +I M TY KLH
Sbjct: 642 RFVSKLWNLARYFNQYKDKENPLKLTDSQRQRISLLKMATYSKLH 686
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 563 TQFSNGSRKYSGSIQVSKSGGWSRISQVISWYINSLHRCDGTFLGG 700
TQ SR S + S + ++WY++SLHR G + G
Sbjct: 43 TQTEANSRLASQRVHRPNSPHLTIYEPQLTWYLSSLHRITGCVVAG 88
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 588 FLEPLLNWVSTQLWILLT-QHPVSWTPIYWS*ALQCCT 478
FL L VS +L +L T Q P++W P+ S A Q C+
Sbjct: 438 FLNFLDEKVSAELLLLGTLQLPLAWNPVQESLAFQWCS 475
>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 265
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -2
Query: 585 LEPLLNWVSTQLWILLTQHPVSWTPIY 505
++P+L+W T++W LL + + +Y
Sbjct: 169 IQPILDWSYTEIWDLLLETNTKYCSLY 195
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 542 RIHSWVDTQFSNGSRKYSGSIQVSK 616
R+ S DT F N KY ++Q+SK
Sbjct: 1331 RVESSSDTVFENTDLKYDNNVQMSK 1355
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 697 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 560
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 240 LPEVAFYMVGPIEEVVAKAETLAKNA*TGQYCVIILKSCRVIY*K 106
LP + +Y+ GP + V AK+ + N +C+ +++S R ++ K
Sbjct: 373 LPPIDYYLNGPYDNVEAKSALM--NI-YSSHCITLIESVRYMHLK 414
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 524 YHGPQFIGAEHYN--VARGVQKILQDYKSLQDIIAILGMDE 408
Y P +G YN VA+ V+ L YK D++ + G +E
Sbjct: 71 YIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEE 111
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 289 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 414
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 9.2
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 641 QVISWYINSLHRCDG 685
+ +SW++N+LH C G
Sbjct: 265 EFLSWFLNTLHNCLG 279
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 595 TVLSRAIAELGIYPAVDPLDSTSRIMDPNLLELSTTMLHVEFRK 464
T+ + + + YP +DP+ + +R P L E + LH E RK
Sbjct: 346 TIATYVLTSIAKYP-MDPISTMTR---PRLYEEAVKRLHAEARK 385
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 688 GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 521
GS+T++ I D++ P + D L + GI PA++ S SR+
Sbjct: 347 GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSRV 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,273
Number of Sequences: 5004
Number of extensions: 66842
Number of successful extensions: 179
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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