Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30778
(778 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0) 173 2e-43
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 129 2e-30
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 35 0.064
SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0) 33 0.20
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94) 29 3.2
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_38678| Best HMM Match : C2 (HMM E-Value=3.1e-29) 28 7.3
SB_57162| Best HMM Match : DUF1086 (HMM E-Value=3.4) 28 9.7
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 28 9.7
SB_34962| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_22733| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.8) 28 9.7
SB_57197| Best HMM Match : Transposase_21 (HMM E-Value=0.27) 28 9.7
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08) 28 9.7
>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
Length = 448
Score = 173 bits (420), Expect = 2e-43
Identities = 83/91 (91%), Positives = 86/91 (94%)
Frame = -1
Query: 775 WSYPTAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDAT 596
+S VGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDAT
Sbjct: 243 YSVFAGVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDAT 302
Query: 595 TVLSRAIAELGIYPAVDPLDSTSRIMDPNLL 503
TVLSR IAELGIYPAVDPLDSTSRIMDPN++
Sbjct: 303 TVLSRGIAELGIYPAVDPLDSTSRIMDPNIV 333
Score = 154 bits (374), Expect = 7e-38
Identities = 73/90 (81%), Positives = 80/90 (88%)
Frame = -3
Query: 515 PQFIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQ 336
P +G EHY +ARGVQKILQDYKSLQDIIAILGMDELSE+DKLTVARARKIQ+FLSQPF
Sbjct: 330 PNIVGTEHYEIARGVQKILQDYKSLQDIIAILGMDELSEDDKLTVARARKIQKFLSQPFV 389
Query: 335 VAEVFTGHAGKLVPLEETIKGFSKILAGTM 246
AEVFTGH GKLVPL+ETI GF+KIL G +
Sbjct: 390 TAEVFTGHDGKLVPLKETIVGFNKILKGEL 419
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -2
Query: 252 DYDHLPEVAFYMVGPIEEVVAKAETLAK 169
+ DHLPEVAFYM+GPIEE VAKA+ LA+
Sbjct: 418 ELDHLPEVAFYMIGPIEEAVAKADRLAE 445
>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 238
Score = 129 bits (312), Expect = 2e-30
Identities = 61/67 (91%), Positives = 65/67 (97%)
Frame = -1
Query: 766 PTAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 587
P+AVGYQPTLAT+MG MQERIT+TKKGSITSVQA+YVPADDLTDPAPATTFAHLDATTVL
Sbjct: 171 PSAVGYQPTLATEMGAMQERITSTKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVL 230
Query: 586 SRAIAEL 566
SR IAEL
Sbjct: 231 SRKIAEL 237
>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 48.4 bits (110), Expect = 6e-06
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = -1
Query: 766 PTAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 593
P G+ + TD+ T+ ER + GSIT + + +P DD+T P P T +
Sbjct: 236 PGRRGFPGYMYTDLATVYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQI 295
Query: 592 VLSRAIAELGIYPAVDPLDSTSRIMDPNLLELSTTMLH 479
+ R + IYP ++ L S SR+M + E T H
Sbjct: 296 YVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDH 333
>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 475
Score = 35.1 bits (77), Expect = 0.064
Identities = 20/73 (27%), Positives = 40/73 (54%)
Frame = -3
Query: 473 VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVP 294
V++ILQ+ + L +I+ ++G L+E DK+T+ ++ + + F +T + K P
Sbjct: 337 VKEILQEEEDLSEIVQLVGKGSLAESDKITL----EVAKLIKDDFLQQNGYTPY-DKFCP 391
Query: 293 LEETIKGFSKILA 255
+T+ S I+A
Sbjct: 392 FYKTVGMLSNIVA 404
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = -1
Query: 694 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 518
++GS+T V A+ P D +DP + T + L + +A+ +P+++ L S S+ M
Sbjct: 258 REGSVTIVGAVSPPGGDFSDPVTSATLNIVQVFWGLDKKLAQRKHFPSINWLISYSKYM 316
>SB_49893| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
Length = 313
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -1
Query: 700 TTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRI 521
T K GS+T++ I A D++ P + D L A+ GI PAV+ S SR+
Sbjct: 118 TGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLESAMFNSGIRPAVNAGISVSRV 177
>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 283 VSSSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSSIPKIAI 432
+S + +L AC +N S T C N+ + +A N+S + + + I++
Sbjct: 585 MSENSLNLTACVINISMTQAACMTNISVTQAACVTNISMTQAACVTNISM 634
>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1924
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 592 VLSRAIAELGIYPAVDPLDSTSRIMDPNLLELSTTMLHVEFRKFFRTTN-PCRTLLLFWV 416
+LSRA L YP+V+ + N ++ ++FRK F N P ++ ++ W+
Sbjct: 1006 MLSRAGKRLPPYPSVEDKEENKHKTSQNEAARGRQLVQIQFRKRFHFRNFPSKSKIVSWI 1065
>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
Length = 1047
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = -3
Query: 476 GVQKILQDYKSLQDII---AILGMDELSEEDKLTVARARKIQRFLSQPFQVAEV 324
G QK L YK QD++ A + ++D + +A A+KI F S ++A +
Sbjct: 372 GPQKYLNTYKKYQDLLNNKAETDVQAFLQDDPVLLALAKKIDEFQSLSREIASL 425
>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = -1
Query: 775 WSYPTAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDAT 596
WS P YQ + +GT+Q+ + +T GS+ + +++P+ L P T +H+ A+
Sbjct: 538 WSSPAQRMYQADPGSPLGTLQQTVGST--GSLPDLTNLHIPS-PLQTPID-TEDSHIQAS 593
Query: 595 T 593
+
Sbjct: 594 S 594
>SB_38678| Best HMM Match : C2 (HMM E-Value=3.1e-29)
Length = 375
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -3
Query: 479 RGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLS--QPFQVAEVFTGHAG 306
RG+ + +S+ +++ LG L+E+ + + RAR +Q S +P A+V HAG
Sbjct: 226 RGLSLSREPDRSVGEVMVSLGYLRLTEKLAVVLVRARDLQPLKSGYKPDPYADVSICHAG 285
Query: 305 K 303
+
Sbjct: 286 R 286
>SB_57162| Best HMM Match : DUF1086 (HMM E-Value=3.4)
Length = 512
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 484 LHVEFRKFFRTTNPCRTLLLFWVWTSYLKKTS*QW 380
LH + + +FR N CR +L W + K + W
Sbjct: 242 LHEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSW 276
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 472 FRKF-FRTTNPCRTLLLFWVWTSYLKKTS*QWHVHVKF 362
FRK+ F+ NPCR L +F S + W VH K+
Sbjct: 198 FRKYGFKVKNPCRILRIFHNHCSQYR----DWEVHKKY 231
>SB_34962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 484 LHVEFRKFFRTTNPCRTLLLFWVWTSYLKKTS*QW 380
LH + + +FR N CR +L W + K + W
Sbjct: 139 LHEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSW 173
>SB_22733| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.8)
Length = 203
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 484 LHVEFRKFFRTTNPCRTLLLFWVWTSYLKKTS*QW 380
LH + + +FR N CR +L W + K + W
Sbjct: 139 LHEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSW 173
>SB_57197| Best HMM Match : Transposase_21 (HMM E-Value=0.27)
Length = 314
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 484 LHVEFRKFFRTTNPCRTLLLFWVWTSYLKKTS*QW 380
LH + + +FR N CR +L W + K + W
Sbjct: 24 LHEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSW 58
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 591 YFLEPLLNWVSTQLWILLTQHPVSWTP-IYWS*ALQC 484
YF++PLL WV +LW + + W P W L+C
Sbjct: 702 YFIQPLLLWVPRKLWKVPL---LLWMPRKLWKVVLKC 735
>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
Length = 718
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 484 LHVEFRKFFRTTNPCRTLLLFWVWTSYLKKTS*QW 380
LH + + +FR N CR +L W + K + W
Sbjct: 167 LHEKLKNWFRNLNMCRKMLSHWQEREHWLKRNTSW 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,447,179
Number of Sequences: 59808
Number of extensions: 499661
Number of successful extensions: 1277
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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