Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30778
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   173   2e-43
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    48   6e-06
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    47   2e-05
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    36   0.032
Z82288-5|CAB05324.1|  380|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    29   4.9  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  173 bits (420), Expect = 2e-43
 Identities = 82/88 (93%), Positives = 86/88 (97%)
 Frame = -1

Query: 766 PTAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 587
           P+AVGYQPTLATDMG+MQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL
Sbjct: 335 PSAVGYQPTLATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 394

Query: 586 SRAIAELGIYPAVDPLDSTSRIMDPNLL 503
           SR IAEL IYPAVDPLDSTSRIMDPN++
Sbjct: 395 SRGIAELAIYPAVDPLDSTSRIMDPNVV 422



 Score =  154 bits (373), Expect = 8e-38
 Identities = 73/90 (81%), Positives = 80/90 (88%)
 Frame = -3

Query: 515 PQFIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQ 336
           P  +G  HY++ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV+RARKIQRFLSQPFQ
Sbjct: 419 PNVVGQNHYDIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQRFLSQPFQ 478

Query: 335 VAEVFTGHAGKLVPLEETIKGFSKILAGTM 246
           VAEVFTGH GK V LEETI+GF+ IL G +
Sbjct: 479 VAEVFTGHQGKFVSLEETIRGFTMILKGEL 508



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = -2

Query: 252 DYDHLPEVAFYMVGPIEEVVAKAETLAK 169
           + DHLPEVAFYM G I++V  KAE LAK
Sbjct: 507 ELDHLPEVAFYMQGGIDDVFKKAEELAK 534


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
 Frame = -1

Query: 766 PTAVGYQPTLATDMGTMQERITTTK--KGSITSVQAIYVPADDLTDPAPATTFAHLDATT 593
           P   G+   + TD+ T+ ER    K  +GSIT +  + +P +D+T P P  T    +   
Sbjct: 310 PGRRGFPGYMYTDLATIYERAGRVKGREGSITQIPILTMPNNDITHPIPDLTGYITEGQI 369

Query: 592 VLSRAIAELGIYPAVDPLDSTSRIM 518
            + + + +  IYP +D L S SR+M
Sbjct: 370 YIDKQLHKRLIYPPIDVLPSLSRLM 394


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = -1

Query: 766 PTAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 593
           P   G+   + TD+ T+ ER      + GSIT +  + +P DD+T P P  T    +   
Sbjct: 298 PGRRGFPGYMYTDLATIYERAGRVEGRDGSITQIPILTMPNDDITHPIPDLTGYITEGQI 357

Query: 592 VLSRAIAELGIYPAVDPLDSTSRIM 518
            + R +    IYP ++ L S SR+M
Sbjct: 358 YVDRQLHNRLIYPPINVLPSLSRLM 382


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
 Frame = -1

Query: 766 PTAVGYQPTLATDMGTMQERITTTK-------KGSITSVQAIYVPADDLTDPAPATTFAH 608
           P   GY   LA  + +  ER    K       +GS+T V A+  P  D  DP  + T   
Sbjct: 358 PADSGYPAYLAARLASFYERAGRVKCLGSPEREGSVTIVGAVSPPGGDFADPVTSATLGI 417

Query: 607 LDATTVLSRAIAELGIYPAVDPLDSTSRIM 518
           +     L + +A+   +P+++ L S S  M
Sbjct: 418 VQVFWGLDKKLAQRKHFPSINWLISYSEYM 447



 Score = 31.5 bits (68), Expect = 0.70
 Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = -3

Query: 470 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQ-RFLSQ 345
           ++ILQ+ + L +I+ ++G   L+E DK+T+  A+ I+  FL Q
Sbjct: 469 KEILQEEEDLSEIVQLVGKASLAESDKVTLEVAKIIKDDFLQQ 511


>Z82288-5|CAB05324.1|  380|Caenorhabditis elegans Hypothetical
           protein ZK896.7 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -1

Query: 751 YQPTLATDMG--TMQERITTTKKGSITSVQ-AIYVPADDLTDPAPATTFAHLDATTV 590
           Y PT  T     T+    TTT+  + T+V+      A  +T P P TT +    TTV
Sbjct: 146 YDPTATTSAAPTTIPPTTTTTRAPTTTTVRKTTQTTATTMTTPKPTTTVSTTTTTTV 202


>Z93391-7|CAB07685.3|  405|Caenorhabditis elegans Hypothetical
           protein W04G5.9 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = -1

Query: 742 TLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELG 563
           T+AT   +     TTTK  + T++    +     T P P TT   +  TT  +R IA   
Sbjct: 173 TVATTKTSPSTLRTTTKPPTTTTIATTRITTKTTTSPPPFTT--TVTTTTSAARTIATTT 230

Query: 562 IYPAVDPLDSTSRIMDP 512
               V P+    + + P
Sbjct: 231 PIKTVPPVKVFGKAIKP 247


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/60 (30%), Positives = 23/60 (38%)
 Frame = -1

Query: 745 PTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAEL 566
           PT  T   T  +  TTT   +  +      P    T PAP TT      TT+ +   A L
Sbjct: 419 PTTTTTTTTTPKPTTTTTTTTTPAPTTTQKPTTTTTTPAPTTTSTTSIPTTIATTTAAPL 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,554,516
Number of Sequences: 27780
Number of extensions: 383441
Number of successful extensions: 1034
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)