Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30778
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.7  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +2

Query: 602 IQVSKSGGWSRISQVISW 655
           ++ SKS GW ++  ++ W
Sbjct: 445 VKSSKSSGWRKLRNIVHW 462


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = +2

Query: 593 SGSIQVSKSGGWSRISQVISW 655
           S   ++ KS GW ++  ++ W
Sbjct: 208 SNEKKIPKSSGWRKLRNIVHW 228


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 477 TCNIVVLSSNKLGSMIRDVESRGS 548
           TC    +SSN LGS  R  +   S
Sbjct: 206 TCKKYAISSNSLGSRSRSFQRTSS 229


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = +2

Query: 614 KSGGWSRISQVISW 655
           KS GW ++  ++ W
Sbjct: 130 KSSGWRKLRNIVHW 143


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 153 QYCVIILKSCRVIY 112
           Q C +IL SC+ IY
Sbjct: 174 QSCPLILGSCKCIY 187


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 281 WFPQVVLVYPH 313
           WFP VV++Y +
Sbjct: 214 WFPLVVIIYTY 224


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 384 CQLVFFR*LVHTQNSNNVLQGFVVLKNFLNSTCNIVVLS 500
           C LV F     ++N N       V KNF N  C  + L+
Sbjct: 84  CSLVEF-----SENKNCNAGSLTVKKNFANKYCGNITLN 117


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +3

Query: 453 VLKNFLNSTCNI 488
           +++N LNSTC++
Sbjct: 340 IVRNHLNSTCSV 351


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 13/58 (22%), Positives = 23/58 (39%)
 Frame = -1

Query: 763 TAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTV 590
           TA   QP +++     +          +T+ Q++ V     T   P T+   +  TTV
Sbjct: 797 TATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNVTTTINTPTTSVISMSGTTV 854


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,458
Number of Sequences: 438
Number of extensions: 4775
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)