Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30778
(778 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 164 7e-41
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 164 7e-41
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 164 7e-41
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 52 3e-07
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 52 3e-07
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 52 3e-07
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 49 4e-06
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 36 0.030
At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing prote... 29 3.4
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 29 3.4
At3g11560.3 68416.m01412 expressed protein 28 6.0
At3g11560.2 68416.m01411 expressed protein 28 6.0
At3g11560.1 68416.m01410 expressed protein 28 6.0
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 28 7.9
At2g31870.1 68415.m03894 poly (ADP-ribose) glycohydrolase (PARG)... 28 7.9
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 164 bits (398), Expect = 7e-41
Identities = 76/88 (86%), Positives = 85/88 (96%)
Frame = -1
Query: 766 PTAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 587
P+AVGYQPTLA+D+G +QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL
Sbjct: 353 PSAVGYQPTLASDLGALQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 412
Query: 586 SRAIAELGIYPAVDPLDSTSRIMDPNLL 503
SR I+ELGIYPAVDPLDSTSR++ P++L
Sbjct: 413 SRQISELGIYPAVDPLDSTSRMLSPHIL 440
Score = 137 bits (331), Expect = 9e-33
Identities = 65/88 (73%), Positives = 73/88 (82%)
Frame = -3
Query: 515 PQFIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQ 336
P +G EHYN ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTVARARKIQRFLSQPF
Sbjct: 437 PHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFH 496
Query: 335 VAEVFTGHAGKLVPLEETIKGFSKILAG 252
VAE+FTG GK V L+E I F +L G
Sbjct: 497 VAEIFTGAPGKYVDLKENINSFQGLLDG 524
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = -2
Query: 249 YDHLPEVAFYMVGPIEEVVAKAETLAKNA 163
YD L E +FYMVG I+EVVAKAE +AK +
Sbjct: 526 YDDLSEQSFYMVGGIDEVVAKAEKIAKES 554
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 164 bits (398), Expect = 7e-41
Identities = 76/88 (86%), Positives = 85/88 (96%)
Frame = -1
Query: 766 PTAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 587
P+AVGYQPTLA+D+G +QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL
Sbjct: 356 PSAVGYQPTLASDLGALQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 415
Query: 586 SRAIAELGIYPAVDPLDSTSRIMDPNLL 503
SR I+ELGIYPAVDPLDSTSR++ P++L
Sbjct: 416 SRQISELGIYPAVDPLDSTSRMLSPHIL 443
Score = 137 bits (331), Expect = 9e-33
Identities = 65/88 (73%), Positives = 73/88 (82%)
Frame = -3
Query: 515 PQFIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQ 336
P +G EHYN ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTVARARKIQRFLSQPF
Sbjct: 440 PHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFH 499
Query: 335 VAEVFTGHAGKLVPLEETIKGFSKILAG 252
VAE+FTG GK V L+E I F +L G
Sbjct: 500 VAEIFTGAPGKYVDLKENINSFQGLLDG 527
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = -2
Query: 249 YDHLPEVAFYMVGPIEEVVAKAETLAKNA 163
YD L E +FYMVG I+EVVAKAE +AK +
Sbjct: 529 YDDLSEQSFYMVGGIDEVVAKAEKIAKES 557
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 164 bits (398), Expect = 7e-41
Identities = 76/88 (86%), Positives = 85/88 (96%)
Frame = -1
Query: 766 PTAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 587
P+AVGYQPTLA+D+G +QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL
Sbjct: 353 PSAVGYQPTLASDLGALQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVL 412
Query: 586 SRAIAELGIYPAVDPLDSTSRIMDPNLL 503
SR I+ELGIYPAVDPLDSTSR++ P++L
Sbjct: 413 SRQISELGIYPAVDPLDSTSRMLSPHIL 440
Score = 137 bits (331), Expect = 9e-33
Identities = 65/88 (73%), Positives = 73/88 (82%)
Frame = -3
Query: 515 PQFIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQ 336
P +G EHYN ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTVARARKIQRFLSQPF
Sbjct: 437 PHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFH 496
Query: 335 VAEVFTGHAGKLVPLEETIKGFSKILAG 252
VAE+FTG GK V L+E I F +L G
Sbjct: 497 VAEIFTGAPGKYVDLKENINSFQGLLDG 524
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = -2
Query: 249 YDHLPEVAFYMVGPIEEVVAKAETLAKNA 163
YD L E +FYMVG I+EVVAKAE +AK +
Sbjct: 526 YDDLSEQSFYMVGGIDEVVAKAEKIAKES 554
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = -1
Query: 766 PTAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 593
P GY + TD+ T+ ER +KGSIT + + +P DD+T P P T +
Sbjct: 295 PGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQI 354
Query: 592 VLSRAIAELGIYPAVDPLDSTSRIMDPNLLELSTTMLH 479
+ R + IYP ++ L S SR+M + E T H
Sbjct: 355 YIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDH 392
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = -1
Query: 766 PTAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 593
P GY + TD+ T+ ER +KGSIT + + +P DD+T P P T +
Sbjct: 295 PGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQI 354
Query: 592 VLSRAIAELGIYPAVDPLDSTSRIMDPNLLELSTTMLH 479
+ R + IYP ++ L S SR+M + E T H
Sbjct: 355 YIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDH 392
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Frame = -1
Query: 766 PTAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 593
P GY + TD+ T+ ER +KGSIT + + +P DD+T P P T +
Sbjct: 294 PGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQI 353
Query: 592 VLSRAIAELGIYPAVDPLDSTSRIMDPNLLELSTTMLH 479
+ R + IYP ++ L S SR+M + E T H
Sbjct: 354 YIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDH 391
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 48.8 bits (111), Expect = 4e-06
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = -1
Query: 733 TDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 560
TD+ T+ ER +KGSIT + + +P DD+T P P T + + R + I
Sbjct: 304 TDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQI 363
Query: 559 YPAVDPLDSTSRIMDPNLLELSTTMLH 479
YP ++ L S SR+M + E T H
Sbjct: 364 YPPINVLPSLSRLMKSAIGEGMTRKDH 390
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 35.9 bits (79), Expect = 0.030
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = -1
Query: 766 PTAVGYQPTLATDMGTMQERITTTK-------KGSITSVQAIYVPADDLTDPAPATTFAH 608
P GY LA + + ER K GS+T V A+ P D +DP + T +
Sbjct: 372 PADSGYPAYLAARLASFYERAGKVKCLGGPERNGSVTIVGAVSPPGGDFSDPVTSATLSI 431
Query: 607 LDATTVLSRAIAELGIYPAVDPLDSTSR 524
+ L + +A+ +P+V+ L S S+
Sbjct: 432 VQVFWGLDKKLAQRKHFPSVNWLISYSK 459
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = -3
Query: 488 NVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 345
N+ +++LQ L +I+ ++G D L+E DK+T+ A+ ++ +L+Q
Sbjct: 477 NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQ 525
>At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing protein
similar to Rieske iron-sulfur protein Tic55 from Pisum
sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 539
Score = 29.1 bits (62), Expect = 3.4
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +3
Query: 396 FFR*LVHTQNSNNVLQGFVVLKNFLNST 479
+FR ++H ++ +NV++ F + KN L++T
Sbjct: 460 YFRHIIHCRSCSNVIKSFELWKNILSAT 487
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -1
Query: 712 ERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDS 533
+R T GS+T++ I A D++ P + D L + GI PA++ S
Sbjct: 584 KRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLS 643
Query: 532 TSRI 521
SR+
Sbjct: 644 VSRV 647
>At3g11560.3 68416.m01412 expressed protein
Length = 872
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 265 LENPLMVSSSGTSLPACPVNTSATWKGCERNL 360
L+ P +VSSS TS P P + T+ C+R +
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRTV 36
>At3g11560.2 68416.m01411 expressed protein
Length = 872
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 265 LENPLMVSSSGTSLPACPVNTSATWKGCERNL 360
L+ P +VSSS TS P P + T+ C+R +
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRTV 36
>At3g11560.1 68416.m01410 expressed protein
Length = 619
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 265 LENPLMVSSSGTSLPACPVNTSATWKGCERNL 360
L+ P +VSSS TS P P + T+ C+R +
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRTV 36
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 706 ITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLS 584
+T T G TSV A+ +P L P P T L++ +LS
Sbjct: 80 VTCTSDG--TSVHALRLPGIGLLGPIPPNTLGKLESLRILS 118
>At2g31870.1 68415.m03894 poly (ADP-ribose) glycohydrolase (PARG)
family protein similar to poly(ADP-ribose)
glycohydrolase [Bos taurus] GI:2062407; contains Pfam
domain, PF05028: poly (ADP-ribose) glycohydrolase (PARG)
Length = 548
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 411 VHTQNSNNVLQGFVVLKNFLNS-TCNIVVLSSNKLGSMI 524
VH QN++N++ G LNS IV LS +G+++
Sbjct: 112 VHFQNADNIVSGIKTGLRLLNSQQAGIVFLSQELIGALL 150
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,416,788
Number of Sequences: 28952
Number of extensions: 351772
Number of successful extensions: 847
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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