Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30776
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 73 1e-14
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 3.2
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 25 3.2
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 24 4.3
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 24 4.3
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 24 5.6
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 23 7.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 23 9.9
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 23 9.9
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 23 9.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 23 9.9
>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 72.5 bits (170), Expect = 1e-14
Identities = 35/64 (54%), Positives = 46/64 (71%)
Frame = +2
Query: 2 HSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 181
HSG P D++++ATRHVLLRQGVLG+KVKIMLP + K KK PD ++V +PK+E
Sbjct: 161 HSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEP 217
Query: 182 PLEP 193
+P
Sbjct: 218 ITKP 221
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 3.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 14 PCNDYVNTATRHVL 55
PC+DYV A R VL
Sbjct: 679 PCSDYVEAAVRQVL 692
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 24.6 bits (51), Expect = 3.2
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 121 RPEEATTRPHP 153
+PEE T+RPHP
Sbjct: 404 KPEEITSRPHP 414
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 24.2 bits (50), Expect = 4.3
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = -2
Query: 174 SSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPSTPCLRST 49
SS G ++ + + LPCWS G + L ++ L T
Sbjct: 110 SSFGEISFLHLSSRYHSVSLPCWSSGTGLAGLFGASSYLVMT 151
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 24.2 bits (50), Expect = 4.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 68 VLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEVRS 211
VLG +KI W K+ P+K + I + P+ L P+SE ++
Sbjct: 61 VLGYSIKISPVWTYNLKDVPEK-ETMSIWIVTPQRRYGILSPSSEYKA 107
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 23.8 bits (49), Expect = 5.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 155 VTEPKDEPVPLEPTSEVRS 211
++EP D +P EP++ VRS
Sbjct: 1 MSEPYDPYIPAEPSAAVRS 19
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 23.4 bits (48), Expect = 7.5
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -1
Query: 103 PRQHDFDLDS*YSLSEKHMSGSSV 32
P+++D D++ S+ E H+S +S+
Sbjct: 17 PKKNDLDIELGESVVEPHLSNNSI 40
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 23.0 bits (47), Expect = 9.9
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Frame = +3
Query: 84 SKSCCRGTSKART--ARR 131
+K CC G SKA+T ARR
Sbjct: 547 NKKCCSGYSKAQTRLARR 564
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 23.0 bits (47), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 274 INIVLYPSDS--GDRLRQRRGREGAHFAGRLEGHGLVLG 164
+N+V+ + S D +R + E +AGR+ G G VLG
Sbjct: 157 VNVVMASTRSLIVDSVRSDQQHEANSWAGRMIGVGNVLG 195
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 23.0 bits (47), Expect = 9.9
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 62 QGVLGIKVKIMLPW 103
QGV G K+++MLP+
Sbjct: 139 QGVRGRKIRVMLPY 152
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 23.0 bits (47), Expect = 9.9
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = +2
Query: 134 PQPDHILVTEPKDEPVPLEPTSEV 205
P P ++V P P+P+ P + +
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPI 757
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 952,718
Number of Sequences: 5004
Number of extensions: 15919
Number of successful extensions: 47
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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