Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30776
(304 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 109 6e-25
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 36 0.005
SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7) 31 0.18
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012) 31 0.24
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 0.55
SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014) 29 0.72
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 29 0.72
SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.95
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_56796| Best HMM Match : CITED (HMM E-Value=1.2) 28 1.3
SB_53228| Best HMM Match : CITED (HMM E-Value=2.5) 28 1.3
SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027) 28 1.3
SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038) 28 1.3
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3) 28 1.3
SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8) 28 1.3
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 1.3
SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_9870| Best HMM Match : GspM (HMM E-Value=1.9) 28 1.3
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 1.7
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_48788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 27 3.9
SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9) 26 5.1
SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_45055| Best HMM Match : Ribosomal_60s (HMM E-Value=0.46) 26 5.1
SB_30292| Best HMM Match : fn3 (HMM E-Value=1.2e-12) 26 6.7
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 26 6.7
SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.7
SB_37087| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.9
SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0) 25 8.9
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54) 25 8.9
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 109 bits (261), Expect = 6e-25
Identities = 47/67 (70%), Positives = 53/67 (79%)
Frame = +2
Query: 2 HSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 181
H+G+P YV+TA RHV LRQGVLGIKVKIMLPWD GK GPKKP PD + + EPKDE V
Sbjct: 159 HAGEPTTHYVDTAVRHVYLRQGVLGIKVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVV 218
Query: 182 PLEPTSE 202
P +PTSE
Sbjct: 219 PAQPTSE 225
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/30 (56%), Positives = 17/30 (56%)
Frame = +1
Query: 94 VAVGPARQERPEEATTRPHPGNRAQGRARA 183
VA GPAR PE TRPHPG GR A
Sbjct: 107 VAAGPARITSPEPPATRPHPGRVEAGRRLA 136
>SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)
Length = 301
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 106 PARQERPEEATTRPHPGNRAQGRARA 183
PAR PE TRPHPG GR A
Sbjct: 42 PARVTSPEPPATRPHPGRVEAGRRLA 67
>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
Length = 1115
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 106 PARQERPEEATTRPHPGNRAQGRARA 183
PAR PE TRPHPG GR A
Sbjct: 537 PARITSPEPPATRPHPGRVEAGRRLA 562
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 29.5 bits (63), Expect = 0.55
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 97 AVGPARQERPEEATTRPHPGNRAQGRA 177
A AR PE TRPHPG GRA
Sbjct: 1497 AARDARITSPEPPATRPHPGRVEAGRA 1523
>SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)
Length = 988
Score = 29.1 bits (62), Expect = 0.72
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 64 RSTRNQGQNHVAVGPA--RQERPEEATTRPHPGNRAQGRARA 183
+ R + VA PA R PE TRPHPG GR A
Sbjct: 801 KQRREPARTPVAALPAAARVTSPEPPATRPHPGRVEAGRRLA 842
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 29.1 bits (62), Expect = 0.72
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 67 STRNQGQNHVAVGPARQERPEEATTRP 147
+++N + H + PA+QE+PE + +P
Sbjct: 162 TSKNTSRTHKIIAPAKQEKPERYSRKP 188
>SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 28.7 bits (61), Expect = 0.95
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 106 PARQERPEEATTRPHPGNRAQGRARA 183
P R PE TRPHPG GR A
Sbjct: 185 PPRITSPEPPATRPHPGRVEAGRRLA 210
>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 97 AVGPARQERPEEATTRPHPGNRAQGRARA 183
A AR PE TRPHPG GR A
Sbjct: 820 AARDARITSPEPPATRPHPGRVEAGRRLA 848
>SB_56796| Best HMM Match : CITED (HMM E-Value=1.2)
Length = 431
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 97 AVGPARQERPEEATTRPHPGNRAQGRARA 183
A AR PE TRPHPG GR A
Sbjct: 42 AARDARITSPEPPATRPHPGRVEAGRRLA 70
>SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)
Length = 417
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 97 AVGPARQERPEEATTRPHPGNRAQGRARA 183
A AR PE TRPHPG GR A
Sbjct: 168 AARDARITSPEPPATRPHPGRVEAGRRLA 196
>SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027)
Length = 804
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 109 ARQERPEEATTRPHPGNRAQGRARA 183
AR PE TRPHPG GR A
Sbjct: 604 ARVTSPEPPATRPHPGRVEAGRRLA 628
>SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038)
Length = 771
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 97 AVGPARQERPEEATTRPHPGNRAQGRARA 183
A AR PE TRPHPG GR A
Sbjct: 386 AARDARITSPEPPATRPHPGRVEAGRRLA 414
>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 121 RPEEATTRPHPGNRAQGRARA 183
RPE TRPHPG GR A
Sbjct: 546 RPEPPATRPHPGRVEAGRRLA 566
>SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3)
Length = 220
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 97 AVGPARQERPEEATTRPHPGNRAQGRARA 183
A AR PE TRPHPG GR A
Sbjct: 42 AARDARITSPEPPATRPHPGRVEAGRRLA 70
>SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8)
Length = 599
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 97 AVGPARQERPEEATTRPHPGNRAQGRARA 183
A AR PE TRPHPG GR A
Sbjct: 425 AARDARITSPEPPATRPHPGRVEAGRRLA 453
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 7 WRPLQ*LRQHCYQTCASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRAR 180
WRP Q Q+C +T R+ NH+ V PA+ E+A H G +Q R
Sbjct: 759 WRPYQ--CQYCGYYFKCETSIIRHMESNHIGVTPAQASVFEQAV--GHRGLASQSALR 812
>SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 97 AVGPARQERPEEATTRPHPGNRAQGRARA 183
A AR PE TRPHPG GR A
Sbjct: 284 AARDARITSPEPPATRPHPGRVEAGRRLA 312
>SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1492
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 109 ARQERPEEATTRPHPGNRAQGRARA 183
AR PE TRPHPG GR A
Sbjct: 1351 ARITSPEPPATRPHPGRVGAGRRLA 1375
>SB_9870| Best HMM Match : GspM (HMM E-Value=1.9)
Length = 522
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 109 ARQERPEEATTRPHPGNRAQGRARA 183
AR PE TRPHPG GR A
Sbjct: 181 ARVTSPEPPATRPHPGRVEAGRRLA 205
>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 97 AVGPARQERPEEATTRPHPGNRAQGRARA 183
A AR PE TRPHPG GR A
Sbjct: 781 AAHDARITSPEPPATRPHPGRVEAGRRLA 809
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 201 SLVGSRGTGSSLGSVTRMWSGCGFFGPFLPCW 106
S+ S G GSSLGS+ R W P W
Sbjct: 215 SIASSLGLGSSLGSMGRDWGRMSTNSPSFQSW 246
>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 109 ARQERPEEATTRPHPGNRAQGRARA 183
AR PE TRPHPG GR A
Sbjct: 792 ARITSPEPPATRPHPGRVEAGRRLA 816
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 74 GIKVKIMLPWDQQGKNGPKKPQ-PDHILVTEPKDEPVPLEPTSEVRS 211
G+K+K+ML D+ G + P P+ P P + P E S +S
Sbjct: 1628 GLKIKLMLKKDRSGGSSPVSPRSPSPCEPRLPLESRSPFESNSSFQS 1674
>SB_48788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +2
Query: 23 DYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 175
++++ HVLL + + I+ K+ + D+ GP+ Q +++ K E
Sbjct: 142 EWISPPREHVLLAKQSIEIETKVWIAIDRISNIGPRTVQEENLQTQNEKFE 192
>SB_32481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 201 SLVGSRGTGSSLGSVTRMWSGCGFFGPFLPC 109
S G GT S+G +W GCGF L C
Sbjct: 63 SPTGILGTTQSIGLSLMVWFGCGFLA-LLAC 92
>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 125 PKKPQPDHILVTEPKDEPVPLEPTSE 202
P+ P P T P P PL P+SE
Sbjct: 295 PRTPTPSPPTPTPPPRSPTPLHPSSE 320
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 45 DMCFSDKEY*ESRSKSCCRGTSKARTARRSHNQTT 149
++C D++Y +R +S R + RRS + TT
Sbjct: 644 ELCVGDEDYTSARPRSSSRPSEGLEELRRSRHPTT 678
>SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1473
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 97 AVGPARQERPEEATTRPHPGNRAQGRARA 183
A R PE TRPHPG GR A
Sbjct: 1027 AARDTRITSPEPPATRPHPGRVEAGRRLA 1055
>SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 1217
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 124 PEEATTRPHPGNRAQGRARA 183
PE TRPHPG GR A
Sbjct: 1077 PEPPATRPHPGRVEAGRRLA 1096
>SB_5198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1037
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 201 SLVGSRGTGSSLGSVTRMWSGCGFFGPFLPCWS 103
S++ +R G+S SV R + G F L CW+
Sbjct: 547 SILRNRHNGNSSASVLRRYRRTGIFNVELFCWN 579
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 253 SDSGDRLRQRRGREGAHFAGRLEGHGL 173
S +GD +R GRE HF + HGL
Sbjct: 771 SSNGDFIRSFGGRESMHFRYCVYSHGL 797
>SB_45055| Best HMM Match : Ribosomal_60s (HMM E-Value=0.46)
Length = 741
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +1
Query: 106 PARQERPEEATTRPHPGNRAQGRARA 183
P+R PE TRPH G GR A
Sbjct: 346 PSRITSPEPPATRPHTGRVEAGRRLA 371
>SB_30292| Best HMM Match : fn3 (HMM E-Value=1.2e-12)
Length = 519
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 46 TCASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPR 189
T AS + +N G + V + + TTR +P R G+AR PR
Sbjct: 185 TSASSDVTYKNHGSPYDEVTATSTYQSLDRTTRTYPDGR--GQARGPR 230
>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 1021
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 58 QTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRAD 195
Q S R+ H+ + QE+P E+ T P A+G + D
Sbjct: 371 QNLSRRSSRSEHMRIMSKLQEKPSESRTNGGPPYNARGTRPPDKRD 416
>SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 80 KVKIMLPWDQQGKNGPK--KPQPDHILVTEPKDEPVPLEPT 196
K +P + +N PK K QP H+L T +D+ + PT
Sbjct: 250 KAPSQVPQVLESQNLPKDRKVQPSHLLSTRERDKADRVRPT 290
>SB_37087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 146 HILVTEPKDEPVPLEPTSEVR 208
HI+ T P D+P+ L+P+S VR
Sbjct: 257 HIIST-PLDQPIRLQPSSPVR 276
>SB_43644| Best HMM Match : SH3_1 (HMM E-Value=0)
Length = 704
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +2
Query: 116 KNGPKKPQ-PDHILVTEPKDEPVPL 187
K P++P+ PDH TE K+ P PL
Sbjct: 291 KPKPERPKIPDHNRNTEQKESPKPL 315
>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
Length = 776
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +1
Query: 55 SQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAP 186
+ T S+R G A P +TRP P A R R+P
Sbjct: 320 ANTHSSRTSGMEANTHSSAPSS-PRNRSTRPRPATAASQRERSP 362
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,792,352
Number of Sequences: 59808
Number of extensions: 139596
Number of successful extensions: 589
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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