Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30776
(304 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 97 2e-21
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 30 0.28
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 30 0.28
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 28 1.5
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 1.5
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 1.5
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 1.5
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 1.5
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 1.5
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 1.5
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 1.5
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 28 1.5
Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical pr... 27 2.0
Z96102-3|CAE17868.1| 686|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z81491-16|CAE17747.1| 686|Caenorhabditis elegans Hypothetical p... 27 2.6
Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 27 2.6
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 27 2.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 27 2.6
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical pr... 26 4.5
AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical ... 26 4.5
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 26 6.0
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 26 6.0
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 26 6.0
Z71186-4|CAA94916.1| 867|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z68748-6|CAD27621.1| 88|Caenorhabditis elegans Hypothetical pr... 25 7.9
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 97.1 bits (231), Expect = 2e-21
Identities = 40/67 (59%), Positives = 52/67 (77%)
Frame = +2
Query: 2 HSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPV 181
HSG P NDY+ A RHV LRQGV+GIKVKIMLP+D +G+NGP+ PDH+ + EP++E +
Sbjct: 161 HSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVL 220
Query: 182 PLEPTSE 202
P EP S+
Sbjct: 221 PKEPHSQ 227
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 31 QHCYQTCASQTRSTRNQGQNHVA 99
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 31 QHCYQTCASQTRSTRNQGQNHVA 99
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 64 RSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPR 189
RSTR +G+ A QE+ E T+ H N+A+ R PR
Sbjct: 430 RSTRGRGRKSQANEENLQEKETEDPTKTHDTNQAKS-TRTPR 470
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 134 PQPDHILVTEPKDEPVPL---EPTSE 202
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 134 PQPDHILVTEPKDEPVPL---EPTSE 202
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 134 PQPDHILVTEPKDEPVPL---EPTSE 202
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 134 PQPDHILVTEPKDEPVPL---EPTSE 202
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 134 PQPDHILVTEPKDEPVPL---EPTSE 202
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +2
Query: 134 PQPDHILVTEPKDEPVPL---EPTSE 202
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 177 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 76
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 177 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 76
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical
protein F40F8.1 protein.
Length = 191
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 247 SGDRLRQRRGREGAHFAGRLEGH 179
+GD LR R REG+ F +E H
Sbjct: 33 AGDLLRAERQREGSEFGALIESH 55
>Z96102-3|CAE17868.1| 686|Caenorhabditis elegans Hypothetical
protein D1086.9 protein.
Length = 686
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 109 ARQERPEEATTRPHPGNRAQGRARAPRADQ 198
A Q+R ++A H G+RA G+ +ADQ
Sbjct: 243 AGQKRTQQADQEQHRGSRAAGQKGTQQADQ 272
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 31 QHCYQTCASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQ 198
QH A + + + + H A Q+ ++A H G+RA G +ADQ
Sbjct: 333 QHRGSRAAGEKGTQQADQEQHRGSRAAGQKGTQQADQEQHRGSRAAGEKGTQQADQ 388
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +1
Query: 31 QHCYQTCASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQ 198
QH A + + + + H A ++ ++A H G+RA G+ +ADQ
Sbjct: 487 QHRGSRAAGEKGTQQLDQERHRGSRAAGEKGTQQADQEQHRGSRAAGQKGTQQADQ 542
>Z81491-16|CAE17747.1| 686|Caenorhabditis elegans Hypothetical
protein D1086.9 protein.
Length = 686
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 109 ARQERPEEATTRPHPGNRAQGRARAPRADQ 198
A Q+R ++A H G+RA G+ +ADQ
Sbjct: 243 AGQKRTQQADQEQHRGSRAAGQKGTQQADQ 272
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 31 QHCYQTCASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQ 198
QH A + + + + H A Q+ ++A H G+RA G +ADQ
Sbjct: 333 QHRGSRAAGEKGTQQADQEQHRGSRAAGQKGTQQADQEQHRGSRAAGEKGTQQADQ 388
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +1
Query: 31 QHCYQTCASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQ 198
QH A + + + + H A ++ ++A H G+RA G+ +ADQ
Sbjct: 487 QHRGSRAAGEKGTQQLDQERHRGSRAAGEKGTQQADQEQHRGSRAAGQKGTQQADQ 542
>Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical
protein C11G6.1 protein.
Length = 643
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 74 GIKVKIMLPWDQQGKNG-PKKPQPDHIL-VTEPKDEPVPLEPTSEVR 208
G + I P +G G PKKP+P+ ++ V +PK P P + T E R
Sbjct: 379 GSSMSIGTPTKVKGLPGRPKKPKPEGVVTVPKPKGRP-PKKATLEKR 424
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 58 QTRSTRNQGQNHVAVGPARQERPEEATTRP--HPGNRAQGRA 177
Q + R Q GP RQ++P++ + +P PG + QG++
Sbjct: 553 QGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQS 594
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 76 NQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQ 198
N+G +H GP R + R H GNR Q + R+ +Q
Sbjct: 71 NRGHHH---GPPRNHNQDRNRHRNHDGNRHQNQDRSRHHNQ 108
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 76 NQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRADQ 198
N+G +H GP R + R H GNR Q + R+ +Q
Sbjct: 915 NRGHHH---GPPRNHNQDRNRHRNHDGNRHQNQDRSRHHNQ 952
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = +1
Query: 91 HVAVGPARQERPEEATTRPH--PGNRAQGRARAPRA 192
H + R ERP A++RP G RAR P A
Sbjct: 43 HASTTNTRMERPSTASSRPRTSTGRAPSARARPPSA 78
>Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical
protein C29F7.3 protein.
Length = 191
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 247 SGDRLRQRRGREGAHFAGRLEGH 179
+GD LR R R G+ + +EGH
Sbjct: 33 AGDLLRAERERAGSEYGALIEGH 55
>AF000261-3|AAB52924.1| 464|Caenorhabditis elegans Hypothetical
protein F19B10.4 protein.
Length = 464
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1
Query: 31 QHCYQTCASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPRAD 195
Q C Q S +S N + GPA++ RPE P +R + + R D
Sbjct: 113 QSCLQNELSALKSANNAMKTSKN-GPAKEHRPENGKLSPETLDRGKEENQEGRQD 166
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 191 ARGARARPWALLPGCGLVVASSGRSCLAGPTAT 93
A G P + G +V++ SGR+ AG TAT
Sbjct: 252 ANGLSRSPTMAVCGAPIVMSPSGRASSAGATAT 284
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 191 ARGARARPWALLPGCGLVVASSGRSCLAGPTAT 93
A G P + G +V++ SGR+ AG TAT
Sbjct: 294 ANGLSRSPTMAVCGAPIVMSPSGRASSAGATAT 326
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 191 ARGARARPWALLPGCGLVVASSGRSCLAGPTAT 93
A G P + G +V++ SGR+ AG TAT
Sbjct: 252 ANGLSRSPTMAVCGAPIVMSPSGRASSAGATAT 284
>Z71186-4|CAA94916.1| 867|Caenorhabditis elegans Hypothetical
protein F23D12.5 protein.
Length = 867
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 55 SQTRSTRNQGQNHVAVGPARQERPEE-ATTRPHPGNRAQGR 174
S+ R + + Q VGP+R+ +PE T+ A+GR
Sbjct: 189 SKLRKSESHEQGEFLVGPSRKRKPETLIETKSKKRKSARGR 229
>Z68748-6|CAD27621.1| 88|Caenorhabditis elegans Hypothetical
protein F13H10.6 protein.
Length = 88
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 110 QGKNGPKKPQPDHILVTEPK 169
QG+ GP PQ H++V E +
Sbjct: 36 QGQQGPYYPQQPHVVVVEER 55
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,455,493
Number of Sequences: 27780
Number of extensions: 98364
Number of successful extensions: 452
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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