Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30776
         (304 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)              87   3e-18
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)              85   9e-18
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...    83   3e-17
At5g48320.1 68418.m05969 DC1 domain-containing protein contains ...    27   3.2  
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    27   3.2  
At5g60600.1 68418.m07602 1-hydroxy-2-methyl-2-(E)-butenyl 4-diph...    25   7.4  
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    25   7.4  
At1g62290.1 68414.m07027 aspartyl protease family protein contai...    25   7.4  
At3g23090.1 68416.m02911 expressed protein                             25   9.7  
At2g44230.1 68415.m05504 expressed protein                             25   9.7  
At2g25920.1 68415.m03110 expressed protein                             25   9.7  
At1g75240.1 68414.m08741 zinc finger homeobox family protein / Z...    25   9.7  

>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score = 86.6 bits (205), Expect = 3e-18
 Identities = 38/63 (60%), Positives = 46/63 (73%)
 Frame = +2

Query: 5   SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 184
           SG P  +Y++ A RHVLLRQGVLGIKVKIML WD  GK+GPK P PD +++  PKD+ V 
Sbjct: 160 SGQPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVY 219

Query: 185 LEP 193
             P
Sbjct: 220 SAP 222


>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score = 85.0 bits (201), Expect = 9e-18
 Identities = 36/67 (53%), Positives = 47/67 (70%)
 Frame = +2

Query: 5   SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 184
           SG P  +Y++ A RHVLLRQGVLG+KVKIML WD +GK GP  P PD +++  PK++ V 
Sbjct: 160 SGQPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVY 219

Query: 185 LEPTSEV 205
           + P   V
Sbjct: 220 IAPAQVV 226


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 35/63 (55%), Positives = 46/63 (73%)
 Frame = +2

Query: 5   SGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVP 184
           SG P  +Y+++A RHVLLRQGVLGIKVK+ML WD +G +GPK P PD +++  PK+E   
Sbjct: 160 SGQPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAI 219

Query: 185 LEP 193
             P
Sbjct: 220 YAP 222


>At5g48320.1 68418.m05969 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 977

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 131 KPQPDHILVTEPKDEPVPLEPTSEV 205
           KPQP+ +   EP+ EP P EP  E+
Sbjct: 154 KPQPELVRDLEPEPEPEP-EPEPEI 177


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
            similar to homeobox transcription factor Hox7 GI:19486
            [Lycopersicon peruvianum]
          Length = 1703

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 103  GPARQERPEEATTRPHPGNRAQGRAR 180
            GP  QE  +E    P+PGNR + RAR
Sbjct: 1459 GPREQEDQDEVA--PNPGNRNKKRAR 1482


>At5g60600.1 68418.m07602 1-hydroxy-2-methyl-2-(E)-butenyl
           4-diphosphate synthase, putative / GcpE family protein
           similar to GcpE [Plasmodium falciparum] GI:13094969;
           contains Pfam profile PF04551: GcpE protein; supporting
           cDNA gi|27462471|gb|AF434673.1
          Length = 741

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 11  DPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNG 124
           DPC    N  T+   L+QGV   + K    +D Q + G
Sbjct: 354 DPCRRLANLGTKAAKLQQGVAPFEEKHRHYFDFQRRTG 391


>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
           (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
           (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
           {Arabidopsis thaliana}; contains Pfam profiles: PF00614
           phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 98  PWDQQGKNGPKKPQPDHILVTEPKDEPVP 184
           P+  QG  G   P P H    EP   P P
Sbjct: 108 PYQPQGNFGAYGPPPPHYSYQEPAQYPPP 136


>At1g62290.1 68414.m07027 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 513

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 152 GCGLVVASSGRSCLAGPTA 96
           GC   +A SG S LAGPTA
Sbjct: 288 GCS-AIADSGTSLLAGPTA 305


>At3g23090.1 68416.m02911 expressed protein 
          Length = 338

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 106 PARQERPEEATTRPHPGNRAQGRAR 180
           P R + P+     P  GNRA+G +R
Sbjct: 271 PTRAKSPKLGRRNPKEGNRAKGASR 295


>At2g44230.1 68415.m05504 expressed protein
          Length = 542

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 189 SRGTGSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPSTP 64
           +RGT +S  SV   +S      P LPC  + N   + +PS P
Sbjct: 197 NRGTQASGVSVGTFFSNSP--NPALPCLKNNNFDFSCMPSKP 236


>At2g25920.1 68415.m03110 expressed protein
          Length = 280

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 46  TCASQTRSTRNQGQNHVAVGPARQERPEEATTRPHP 153
           T  + T S++ + +    V P R +RP  +T  P P
Sbjct: 122 TATASTSSSQPESRPTSPVSPYRYQRPLTSTNSPQP 157


>At1g75240.1 68414.m08741 zinc finger homeobox family protein /
           ZF-HD homeobox family protein
          Length = 309

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 65  GVLGIKVKIMLPWDQQGKNGPKKP 136
           G +G+K ++   W    KN  KKP
Sbjct: 279 GEIGVKRQVFKVWMHNNKNNAKKP 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,304,087
Number of Sequences: 28952
Number of extensions: 94980
Number of successful extensions: 315
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)