Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30775
         (796 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.6  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    23   2.8  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    23   2.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.6  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +3

Query: 486 SNKQ*SGTMFKLAFGLGEDIEKREKAMANLLVLAKENSGAEVMLKNGVVQRIQQLL---K 656
           +N+  S   + LA G+GE IE        +  +  +N+   ++    +      L+   K
Sbjct: 418 NNQPYSRDSYNLA-GMGETIEDLLHFCRTMYSMKVDNAEYALLTAIVIFSERPALIEGWK 476

Query: 657 VEKNSEIYINAIR 695
           VEK  EIY+ A+R
Sbjct: 477 VEKIQEIYLEALR 489


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +1

Query: 391 KTIFTVDPTNKAVQPILSRLHT----VVQERARQNAQTSNKVEQCLSWL 525
           +TI+++ P  +  Q +L  LH+    V+ ER +  + +S    + L+ L
Sbjct: 222 ETIYSLTPQGRKEQKVLKSLHSFSNNVIAERKKHFSSSSYSSRKRLAML 270


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +1

Query: 391 KTIFTVDPTNKAVQPILSRLHT----VVQERARQNAQTSNKVEQCLSWL 525
           +TI+++ P  +  Q +L  LH+    V+ ER +  + +S    + L+ L
Sbjct: 222 ETIYSLTPQGRKEQKVLKSLHSFSNNVIAERKKHFSSSSYSSRKRLAML 270


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 577  NRLAMAFSRFSISSPNPKANLNIV 506
            NR++ A     +  PN KAN N V
Sbjct: 1431 NRVSQARPSVQLRYPNGKANENFV 1454


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 577  NRLAMAFSRFSISSPNPKANLNIV 506
            NR++ A     +  PN KAN N V
Sbjct: 1431 NRVSQARPSVQLRYPNGKANENFV 1454


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,982
Number of Sequences: 336
Number of extensions: 3640
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)