Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30775
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 48 1e-06
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 48 2e-06
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 45 1e-05
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 41 2e-04
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 39 7e-04
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 36 0.005
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 31 0.25
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 30 0.33
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo... 30 0.44
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 28 1.8
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 27 2.3
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 27 2.3
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 2.3
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 27 2.3
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 27 2.3
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 3.1
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 5.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 5.4
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 26 5.4
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 26 7.1
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 26 7.1
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 48.4 bits (110), Expect = 1e-06
Identities = 28/79 (35%), Positives = 40/79 (50%)
Frame = +1
Query: 223 IFKKSGRSLLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIF 402
++ S + L+ K + KV+ DC AL I P D K ++RR A+ L A RD +
Sbjct: 43 VYADSSLTHLRKKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSL 102
Query: 403 TVDPTNKAVQPILSRLHTV 459
+DP N +Q L RL V
Sbjct: 103 ELDPNNTYIQKSLHRLKEV 121
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/79 (34%), Positives = 46/79 (58%)
Frame = +1
Query: 247 LLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDPTNKA 426
LL+ K E+ +SD D AL I K L R++A E LE++EEA RD ++ +D ++
Sbjct: 271 LLRLKRPEEALSDSDNALAIDSSYLKGLKVRAKAHEALEKWEEAVRDVQSAIELDASDAN 330
Query: 427 VQPILSRLHTVVQERARQN 483
++ L RL +++ R++
Sbjct: 331 LRQELRRLQLELKKSKRKD 349
Score = 43.6 bits (98), Expect = 3e-05
Identities = 24/53 (45%), Positives = 31/53 (58%)
Frame = +2
Query: 98 EEAESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLR 256
E AE K GN +K + Y EAI YT+AI+L + LA Y NRAA Y++
Sbjct: 21 ELAEKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSA--LAIYYSNRAATYMQ 71
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +2
Query: 107 ESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLRPKNSKK 274
E+ KN+GND F+ NYQ+A Y++A+ + +A NRA LR K ++
Sbjct: 224 ENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEE 279
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 226 FKKSGRSLLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEA 378
+ + ++ EFE + D ++ I P+ PK R QA+E L EA
Sbjct: 62 YSNRAATYMQIGEFELALCDAKQSDRIKPDVPKTQSRIRQAYEGLSILNEA 112
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 44.8 bits (101), Expect = 1e-05
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = +2
Query: 89 VVQEEAESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAY 250
V +EEAE K +GN+A +++YQ+A+ YTKAI + Y NRAAAY
Sbjct: 78 VNKEEAEKLKLEGNNAIAAKDYQKALDLYTKAIEIDPTS----PVYYSNRAAAY 127
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +1
Query: 229 KKSGRSLLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTV 408
K G + + K+++K + KA+EI P P R+ A+ L +FE A DA T ++
Sbjct: 87 KLEGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDALTCLSL 146
Query: 409 DP 414
DP
Sbjct: 147 DP 148
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Frame = +2
Query: 98 EEAESYKNKGNDAFKSENYQEAITFYTKAINLAEK-GSRD--LATYLKNRAAAYLRPKNS 268
E A++++ GN+ F S+ Y++A FYTKA LA+K G +D +A Y NRAA L +N
Sbjct: 62 EVAQNFREHGNECFASKRYKDAEEFYTKA--LAQKCGDKDIEIACY-SNRAACNLLFENY 118
Query: 269 KK 274
++
Sbjct: 119 RQ 120
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 39.1 bits (87), Expect = 7e-04
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 262 EFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDP-TNKAVQPI 438
+FE+VI D +AL + KAL RRS A+E L + +EA D+ D N+++
Sbjct: 199 DFEQVIKDTSEALSLDSSYVKALNRRSAAYEQLGKLDEALMDSTVSCIFDGFANESMTAT 258
Query: 439 LSRLHTVVQER 471
+ RL V E+
Sbjct: 259 VERLLKKVAEK 269
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +2
Query: 98 EEAESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLR 256
++AE + KGN+ FKS ++ AI YT+ A R NRAAAYL+
Sbjct: 397 DKAEESRVKGNELFKSGDFANAIKEYTEMTKRAPSDPRGFG----NRAAAYLK 445
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +1
Query: 238 GRSLLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDP 414
G L K+ +F I + + + P DP+ R+ A+ + E RD +DP
Sbjct: 406 GNELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAAYLKVMAPAECIRDCNKAIELDP 464
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 30.7 bits (66), Expect = 0.25
Identities = 26/114 (22%), Positives = 53/114 (46%)
Frame = +1
Query: 187 KFGRKRQPRPCNIFKKSGRSLLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLER 366
K R P + + ++L K K+ K+ C ++LE D +R +R
Sbjct: 344 KISRTTDTPPASTSNSNKKNLDKLKKMRKL---CSRSLEPYELDSNTQRKR-------KR 393
Query: 367 FEEAYRDAKTIFTVDPTNKAVQPILSRLHTVVQERARQNAQTSNKVEQCLSWLL 528
+E++ + +KT+ VD N+ + L R ++ ++ + +T E+CLS ++
Sbjct: 394 YEDSLKKSKTLDKVDSLNRKMAKELDRKNSKELQKINKVKRTK---EECLSEII 444
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 98 EEAESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLRPKN 265
+EA KN+ N K + +AI YTKAI L A NR+ A+L+ ++
Sbjct: 3 KEALELKNEANKFLKEGHIVQAIDLYTKAIELDSTN----AILYSNRSLAHLKSED 54
>SPAC2F3.02 |||ER protein translocation subcomplex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 86 MVVQEEAESYKNKGNDAFKSENYQEAITFYTKAINLA 196
M + + K N+AFK + Y+EA Y A+ LA
Sbjct: 56 MALSTQVNKMKQTANEAFKRKKYEEAKKLYGLALQLA 92
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +2
Query: 398 YLLWTQLTKLSNLFYHVYTL--*YKSELAKMLKQAIK 502
YL+ T ++ N+F H++TL +K+ L KM K++++
Sbjct: 20 YLVTTLISLKENVFLHIFTLTFLFKAFLLKMAKRSVE 56
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +1
Query: 250 LKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDAKTIFTVDPTNKAV 429
L K F K I AL I P+D A +A+ R+ A + +DP + V
Sbjct: 661 LNAKNFHKAIVHFQSALRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILDPDDWYV 720
Query: 430 QPILSRL 450
+ ++ L
Sbjct: 721 KYFIATL 727
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 289 DKALEIIPEDPKALFRRSQAFECL-ERFEEAYRDAKTI 399
D +E+ P++ + L RRS+AFE L F + D ++
Sbjct: 407 DSTVEVNPDEKEGLERRSRAFELLINAFVQLQHDVNSL 444
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 235 SGRSLLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFEEAYRDA-KTIFTV 408
SG++ + EKV+ D D + I KAL + A E RF + Y A +T+++V
Sbjct: 761 SGKTFISFYAMEKVLRDNDDGVVIYVAPTKALVNQLSA-EVYARFNKHYPHAGQTVWSV 818
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -1
Query: 631 TTPFFNITSAPLFSFAKTNRLAMAFSRFSISSPNPKANLN 512
+TP F+ S+PL S + N L++ S ++SSP KAN N
Sbjct: 376 STPVFSTDSSPLSSRTRENLLSLIPS--AVSSPT-KANTN 412
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +2
Query: 107 ESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAYLRPKN 265
E +GN A+ +NY+EA+ Y +A+ +E S + L+NR +L K+
Sbjct: 33 EQLVTQGNMAYAQKNYEEAVDKYGQALMQSE--SIHGSESLENRNVLWLYGKS 83
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 397 IFTVDPTNKAVQPILSRLHTVVQERARQNAQTSNKVEQCLSW 522
+FT P K Q + + LH +++E+ N Q + V + + W
Sbjct: 152 LFTAQPAEKIQQLLKAELHNILEEK---NLQLESIVSEDVDW 190
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 391 KTIFTVDPTNKAVQPILSRLHTVVQERARQNAQTSNKVEQC 513
K FT+D T K ILS ++ V+E + +T+ E C
Sbjct: 161 KATFTIDITAKENYTILSNMN-AVEETVKDGLKTARFAETC 200
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 259 KEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFE 372
K++EK+ SD D+ + + ED + RS EC +E
Sbjct: 1052 KDYEKIRSDADRVITSLKEDIEK--ERSLMKECHSNYE 1087
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/54 (22%), Positives = 25/54 (46%)
Frame = +2
Query: 89 VVQEEAESYKNKGNDAFKSENYQEAITFYTKAINLAEKGSRDLATYLKNRAAAY 250
+V E ++ GN+ F+ ++ +AI +T +++ L NR+ Y
Sbjct: 407 MVSALVEEQQSTGNELFRKGDFSQAIEEFTNSLSQLPAKHTKRVPLLSNRSLCY 460
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +1
Query: 388 AKTIFTVDPTNKAVQPILSRLHTVVQERARQNAQTSNKVEQCLS 519
A T D TN + +P+ S L T RQ + + CL+
Sbjct: 129 AVTNLNSDETNTSSEPVTSPLRTTPNSIKRQKRLFKSPISNCLN 172
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 579 VLAKENSGAEVMLKNGVVQRIQQLLK 656
+L ENSG V N VQRI+ L+K
Sbjct: 436 ILTYENSGVSVDNGNEFVQRIKDLVK 461
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,587
Number of Sequences: 5004
Number of extensions: 60419
Number of successful extensions: 223
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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