Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30775
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              25   1.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.7  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   5.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   7.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   10.0 

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 241 RSLLKTKEFEKVISDCDKALEIIPEDPKALFRRSQAFECLERFE 372
           R++L   E ++++++C         DP AL + S+  EC  +++
Sbjct: 89  RAVLNDNEADQLLAECSPI-----SDPNALIKISKILECFFKYK 127


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +3

Query: 528 GLGEDIEKREKAMANLLVLAKENSGAEVMLKNGVVQRIQQLL---KVEKNSEIYINAIR 695
           G+GE IE        +  +   N+   ++    +      LL   KVEK  EIY+ A+R
Sbjct: 451 GMGETIEDLLHFCRQMYAMKVNNAEYALLTAIVIFSERPNLLEGWKVEKIQEIYLEALR 509


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 719 EH*KNKSSFESCWDTW 766
           +H KNK  FES  + W
Sbjct: 524 QHAKNKDKFESVEEDW 539


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 202 FFGQIYRLSVKSDCLLIVFRFKSIVSFIFV 113
           F    YR   K++ L    RFK +   IFV
Sbjct: 44  FSKDFYRQDTKNNLLNAYVRFKLVTDCIFV 73


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 245 LRPDFLNMLQGL 210
           +RPDF+NML  L
Sbjct: 266 VRPDFINMLMEL 277


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 361 ERFEEAYRDAKTIFTVDPTNKAVQPI 438
           ER  +++ +A   F ++PT +  QP+
Sbjct: 236 ERRAQSHLEAHCYFDIEPTVQQHQPV 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,511
Number of Sequences: 438
Number of extensions: 4366
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)