Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30774
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    33   0.038
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    30   0.27 
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    28   1.4  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    28   1.4  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   2.5  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   3.3  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.3  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    27   3.3  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    27   3.3  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.6  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   10.0 
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    25   10.0 
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   10.0 
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    25   10.0 
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    25   10.0 

>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 33.1 bits (72), Expect = 0.038
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = -1

Query: 543 DQYDRSRECRSSIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVN 364
           D   R    R S++  +  N P+ +KP   A GPL    ++S     +A A  + +T   
Sbjct: 299 DASPRQARPRRSVSLATGLNSPSVSKPPSSATGPLYHSPQSSLTNSSVASADVQERTHNT 358

Query: 363 NPVKPRDSEVVEETKSEQ 310
           N   P   ++ E T   Q
Sbjct: 359 NGASPIQDQISEFTDQHQ 376


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 19/59 (32%), Positives = 24/59 (40%)
 Frame = -1

Query: 516 RSSIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDS 340
           RS I+  ++S P T T P  P     K I   SPV    +    K    +N    PR S
Sbjct: 661 RSVISAATDSKPSTRTSP--PFVNNTKPIVAKSPVTVTASSETNKKSQKINKKASPRVS 717


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 566 STEKPAEATSTTGVASAAPALRNHLSP 486
           +T KP E TSTT  A++AP L N+  P
Sbjct: 337 NTSKPTENTSTT--ATSAPPLSNNTKP 361


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 597 PLTTKSAWCSVY*ETR*SDQYDRSRECRSSIAKPSESNPPTETKPEQP 454
           P +  S+W SV       ++   S    +    P E NPPTE++PE+P
Sbjct: 165 PSSLASSWASVGQRLGTENEASGSTTPVTQSGPPRE-NPPTESQPEKP 211


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 546 SDQYDRSRECRSSIAKPSESNPPTETKPEQPAAGP 442
           SD    +    SS  + S + P TET+PE+ A  P
Sbjct: 16  SDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEP 50


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -1

Query: 513 SSIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDS 340
           SS+AK   + P +   P +    P+K   +NS   + + G  +     + N +  R S
Sbjct: 497 SSVAKTKSTTPKSTDTPTEATTSPVKVSTKNSNTTENLNGINESNMPMLQNGLPLRTS 554


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = -1

Query: 531 RSRECRSSIAKPSESNPPTETKPEQ-PAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPV 355
           +S++  +S A  S+S   ++ +P   P  G  K   EN  V +    + KK +    NP 
Sbjct: 69  KSQKLETSDALKSKSKDSSKKEPVVVPKKGTPKIFQENHKVKK--VKSPKKEKLVGKNPA 126

Query: 354 KPRDSEVVEETKSEQEK 304
           +  D+  VE+T+  ++K
Sbjct: 127 EKEDTTDVEDTQKLEQK 143


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -1

Query: 606 LPKPLTTKSAWCSVY*ETR*SDQYDRSRECRSSIAKP-SES--NPPTETKPEQPAAG 445
           LP PLT  +A   V+ E    ++  R R CRS+ + P SES  N P  +    P+ G
Sbjct: 264 LPTPLTPSNAHWVVHNE---GNRNRRERPCRSNGSSPTSESALNSPASSVSSLPSLG 317


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 317 DLVSSTTSESLGFTGLLTVVWIFLTAPAMPCRTGLFSKICFNGPAAGCSGFVSVGGLDSD 496
           DL    +S+++ F+ L+  +   L+    P +T +  +  +N P A    F+S  GLD D
Sbjct: 129 DLEKEGSSDAVDFSDLINFLNAKLSKKDDPRKTLVHLRF-YNAPDAPSENFLSTTGLDVD 187


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 537 YDRSRECRSSIAKPSESNPPTE 472
           Y+ SR  R++I+KPS +NPP +
Sbjct: 6   YEGSR--RNTISKPSNNNPPLD 25


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 480 PTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKP 349
           P+ T    PA    K I    P  +  AGA   +++  N+P+ P
Sbjct: 643 PSPTSLLDPARAVRKVIDGIDPPKEAGAGATADVESAANSPITP 686


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 343 ISWLHWIIDCCLDFFNC 393
           I WL W+I CC+  F C
Sbjct: 237 IIWLLWLIICCI-LFGC 252


>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = -3

Query: 595 SYHQIGLVLSLLRNPLKRPVRPESRVPLQHCETI*VQSAH*NK 467
           +Y   G + ++++NP+ + + PE ++ +    T+ ++S   NK
Sbjct: 37  NYQYDGKLQNVIKNPIVKELYPEQKIKIYSRITLTIESMPQNK 79


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
 Frame = -1

Query: 525 RECRSSIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQ-------GIAGAVKKIQTTV 367
           ++  S I   S + PP   +P QP +G  +      P          G  GA+ ++ T+ 
Sbjct: 227 QQTTSPIFSSSSTPPPPPPRPSQPTSGESQNTNPRFPFSAQSFVFSVGPNGALHQVNTST 286

Query: 366 NNP 358
            NP
Sbjct: 287 ENP 289


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +1

Query: 244 YPHHSTVTAVTVYWQQNDASLLLLRFSLFNHFR----ISWLHWIIDCCLDF-FNCSCDAL 408
           Y + + V AV V        + ++   LFN  R    I W+ W+I CC+ F +  S D +
Sbjct: 129 YFYETWVKAVKVTVISLAKCVKVISIGLFNIRREMMIIIWILWLIICCILFVYIKSGDLI 188

Query: 409 QNWAVL 426
            N A++
Sbjct: 189 LNKALI 194


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 343 ISWLHWIIDCCLDFFNC 393
           I WL W+I CC+  F C
Sbjct: 204 IIWLLWLIICCI-LFGC 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,785
Number of Sequences: 5004
Number of extensions: 39850
Number of successful extensions: 140
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)