Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30774
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671     29   3.4  
03_06_0741 + 35893538-35895600,35896274-35896474,35896701-358968...    29   4.5  
03_05_0853 - 28245612-28245700,28245788-28245867,28246315-282463...    29   4.5  
09_04_0347 + 16887182-16888504                                         28   5.9  
08_02_0270 + 15108178-15108587,15108678-15108774,15109445-151094...    28   7.8  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    28   7.8  
02_01_0210 + 1402037-1402066,1402449-1402544,1402611-1403033,140...    28   7.8  

>05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671
          Length = 340

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 578 PGAQSTEKPAEATSTTGVASAAPALRNHLS---PIRPLK 471
           P  Q  EK  EAT  T  A+AA    NH S   P  PL+
Sbjct: 190 PQQQKEEKAGEATMATAAAAAASTQGNHTSHHFPAAPLQ 228


>03_06_0741 +
           35893538-35895600,35896274-35896474,35896701-35896814,
           35897570-35897649,35897772-35897896,35898008-35898079
          Length = 884

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 578 PGAQSTEKPAEATSTTGVASAAPALRNHLSPI 483
           PG +   KP+ A ST+  +S++P+L   L P+
Sbjct: 23  PGGKPRLKPSCAASTSSSSSSSPSLAEQLEPL 54


>03_05_0853 -
           28245612-28245700,28245788-28245867,28246315-28246395,
           28246746-28246796,28246876-28247081,28247360-28247573,
           28247689-28247734,28248956-28249025,28249747-28249815
          Length = 301

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 440 NGPAAGCSGFVSVGGLDSDGFAMLERHSRLRSYWSLQRVSQ*TEHQA 580
           NGP +    ++++     D FA L R SRL  +WS+   S+  E QA
Sbjct: 176 NGPVS--PNYLTISSKVRDCFAFLHRGSRLLGWWSIDEGSK--EEQA 218


>09_04_0347 + 16887182-16888504
          Length = 440

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = -1

Query: 510 SIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVV 331
           S   PS++ PP    P+  AA P   +   +      +GA         NP  PR  EV 
Sbjct: 42  SSPSPSKTPPPANPNPKSAAAPP-SAVAAPASAAGSDSGAASDSPRAAGNPSGPRSIEVN 100

Query: 330 EETK 319
            +++
Sbjct: 101 SDSE 104


>08_02_0270 + 15108178-15108587,15108678-15108774,15109445-15109492,
            15109583-15109806,15111367-15111463,15111556-15111651,
            15112297-15112544,15112632-15112715,15112787-15113236,
            15114880-15115024,15115116-15115217,15115677-15115769,
            15117308-15117349,15119085-15119113,15119210-15119251,
            15119922-15119997,15120764-15120835,15121208-15121326,
            15121428-15121491,15121576-15123009
          Length = 1323

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +2

Query: 548  QRVSQ*TEHQADLVVRGLGS*MENFVHQKSGQKAPATVDRSG 673
            +R S  T H+AD  +  L S   NF+H KSG   P    RSG
Sbjct: 1002 RRKSDKTGHEADSDMSILPSDSRNFLH-KSGNLEPPISSRSG 1042


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -1

Query: 489  SNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVKPRDSEVVEETKSEQ 310
            S+P    KP +P   P+K +   +P+ Q     + K        +KPRD+   E+ K   
Sbjct: 2006 SSPAAAEKPAEPIVAPIKVL---TPISQDDQRQLYKWMLEEKRKIKPRDA--AEKKKING 2060

Query: 309  EK 304
            EK
Sbjct: 2061 EK 2062


>02_01_0210 +
           1402037-1402066,1402449-1402544,1402611-1403033,
           1403126-1403215,1403330-1403401,1403851-1403980,
           1404172-1404269
          Length = 312

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 447 GPLKQIFENSPVLQGIAGAVKK 382
           G +KQ+ E  PV++G+ GA+K+
Sbjct: 264 GKVKQLGEKFPVIRGLLGAIKR 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,650,401
Number of Sequences: 37544
Number of extensions: 281747
Number of successful extensions: 1093
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)