Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30774
(675 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0) 34 0.12
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027) 29 2.6
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9) 28 6.0
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 28 7.9
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84) 28 7.9
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34) 28 7.9
>SB_50641| Best HMM Match : Rad21_Rec8_N (HMM E-Value=0)
Length = 816
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = -1
Query: 513 SSIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQT-TVNNPVKPRDSE 337
S I KP+ PPT+T+ ++++F N P+++ AG + + T + N + ++
Sbjct: 586 SDIVKPATLAPPTKTRKRLKKRSKVEELFAN-PMVELFAGPLVECFTENLTNKIAEDSAQ 644
Query: 336 VVEETKSEQE 307
EE +SE++
Sbjct: 645 KEEEEESEEK 654
>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
Length = 2261
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/75 (21%), Positives = 30/75 (40%)
Frame = -1
Query: 531 RSRECRSSIAKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVK 352
R + + + +P E PP T P +P G + + P+ + A + K V +
Sbjct: 1242 RGKSPKKGMEEPEEEKPPEPTGPPEPEPGSEEWEYVAQPIDKEFADVLSKQWEIVEDTYV 1301
Query: 351 PRDSEVVEETKSEQE 307
V + + E+E
Sbjct: 1302 ATCKHVFRDIRHEKE 1316
>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2492
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 581 RPGAQSTEKPAEATSTTGVASAAPALRNH 495
RPGA KP + TST+ +S A+ NH
Sbjct: 778 RPGAPWPGKPGDETSTSSGSSVLAAISNH 806
>SB_54649| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 1217
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -2
Query: 335 WLKRLNLSKRREASFCCQYTVTAVTVEWWG**QRQ*RVESGSRRNQGIHRRKTGRGKRE- 159
++K L + FC ++ T VE G +R R SRR Q H R+ G RE
Sbjct: 863 YMKALKTKDFSKLEFCLRHPYTIALVERLGEVERNGRQGPDSRRRQ-THGRRGGEEVREA 921
Query: 158 -RNNSRKQD 135
R+ S + D
Sbjct: 922 IRDRSSQPD 930
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 290 KMTPPFSCSDLVSSTTSESLGFTGLLTVVWIFLTAPAMPCRTGLFS 427
+M P + +++ + L F L+T + P +PC TG++S
Sbjct: 66 EMLPVVDAQEAINALMEQRLKFVPLVTSHQMVPRVPPVPCPTGMYS 111
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = -1
Query: 507 IAKPSESNPPTETKP-EQPAAGPLKQIFENSPVLQG--IAGAVKKIQTTV--NNP---VK 352
IA+P+ P E + E A G ++ E + +Q I V+++ T V +P VK
Sbjct: 1332 IAEPTSEETPVEGESLEAQAVGHVEAAGEETSPVQSNQIESTVEEVPTDVPTESPSAEVK 1391
Query: 351 PRDSEVVEETKSE 313
P S++VE T E
Sbjct: 1392 PVQSDIVESTSDE 1404
>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 227 RVESGSRRNQGIHRRKTGRGKRERNNSRKQD 135
R ++ +R N + R+T R NN+R+ D
Sbjct: 126 RTDNNNRNNNNKNNRRTDNNNRNNNNNRRTD 156
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 365 LTVVWIFLTAPAMPCRTGLFSKICFNGPAAGCSGFVSVGGLDSDGFAMLERHSRLRSYWS 544
++V+ F + PA C LF C GP + + + D+ + ML+ S+ SY S
Sbjct: 29 ISVLARFCSFPARCCSLALF---CIRGPVSYVTSLLYRSDTDTQIYLMLKDWSQRVSYRS 85
Query: 545 LQR 553
QR
Sbjct: 86 EQR 88
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 335 WLKRLNLSKRREASFCCQYTVTAVTVEWWG**QRQ*RVESGSRRNQGIHRRKTGRGKRE- 159
++K L + + FC ++ T VE +R R SRR Q H R+ G+ RE
Sbjct: 1071 YMKALKTKRFSKLEFCLRHPYTIALVERLEEVERDGRQGPDSRRRQ-THERRGGKEVREA 1129
Query: 158 -RNNSRKQD 135
R+ S + D
Sbjct: 1130 IRDRSSQPD 1138
>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
Length = 944
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = -1
Query: 507 IAKPSESNPPTETKP-EQPAAGPLKQIFENSPVLQG--IAGAVKKIQTTV--NNP---VK 352
IA+P+ P E + E A G ++ E + +Q I V+++ T V +P VK
Sbjct: 227 IAEPTSEETPVEGESLEAQAVGHVEAAGEETSPVQSNQIESTVEEVPTDVPTESPSAEVK 286
Query: 351 PRDSEVVEETKSE 313
P S++VE T E
Sbjct: 287 PVQSDIVESTSDE 299
>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
Length = 674
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 543 DQYDRSRECRSSIAKPSESNPPTETKPEQPAA 448
D+Y+R R+ +S+ + P+E P E PAA
Sbjct: 240 DRYERFRQAQSTPSTPTEPPRPAEPPRPSPAA 271
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,641,488
Number of Sequences: 59808
Number of extensions: 308168
Number of successful extensions: 1259
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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