Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30774
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06970.1 68414.m00742 cation/hydrogen exchanger, putative (CH...    34   0.075
At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa...    30   1.2  
At3g10250.2 68416.m01227 expressed protein                             28   5.0  
At3g10250.1 68416.m01226 expressed protein                             28   5.0  
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:...    28   5.0  
At3g24560.3 68416.m03086 expressed protein  contains Pfam profil...    28   6.6  
At3g24560.2 68416.m03084 expressed protein  contains Pfam profil...    28   6.6  
At3g24560.1 68416.m03085 expressed protein  contains Pfam profil...    28   6.6  
At1g08710.1 68414.m00967 F-box family protein similar to ESTs gb...    28   6.6  
At5g45360.1 68418.m05569 F-box family protein  similar to SKP1 i...    27   8.7  
At4g22320.1 68417.m03227 expressed protein                             27   8.7  
At4g12610.1 68417.m01987 transcription initiation factor IIF alp...    27   8.7  

>At1g06970.1 68414.m00742 cation/hydrogen exchanger, putative
           (CHX14) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 829

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 320 LVSSTTSESLGFTGLLTVVWIFLTAP-AMPCRTGLFSKICFNGPAAGCSGFVSVGGLDSD 496
           L  S TSE LG        W+ ++ P   P  TGL +K+     +     F+S+ GL ++
Sbjct: 291 LTISLTSEVLGVHAAFGAFWLGVSLPDGPPLGTGLTTKLEMFATSLMLPCFISISGLQTN 350

Query: 497 GFAMLERHSRL 529
            F + E H ++
Sbjct: 351 FFIIGESHVKI 361


>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
           profile PF01554: MatE Uncharacterized membrane protein
           family
          Length = 502

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 651 GAFWPLFWCTKFSI*LPKPLT 589
           G  WPL WCT  S+ L  P+T
Sbjct: 174 GTTWPLMWCTLVSVLLHLPIT 194


>At3g10250.2 68416.m01227 expressed protein
          Length = 324

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 498 PSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNP 358
           PS  N  T  +    +   L     N P++QG+ G + K +T   NP
Sbjct: 158 PSSINISTHARRVDASPNMLSSQTTNMPMMQGMNGGMIKSETAFTNP 204


>At3g10250.1 68416.m01226 expressed protein
          Length = 324

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 498 PSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNP 358
           PS  N  T  +    +   L     N P++QG+ G + K +T   NP
Sbjct: 158 PSSINISTHARRVDASPNMLSSQTTNMPMMQGMNGGMIKSETAFTNP 204


>At2g33240.1 68415.m04072 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin my5A
            (SP:Q02440) {Gallus gallus}
          Length = 1770

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -1

Query: 513  SSIAKPSESNPPTETKPEQPAAGPLKQI 430
            +S+AKPSE N PTET   Q   G L Q+
Sbjct: 1553 NSLAKPSEENSPTET--WQDVIGLLNQL 1578


>At3g24560.3 68416.m03086 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 456

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 398 AMPCRTGLFSKICFNGPAAGCSG 466
           A+PCRT L +  C+  PA G  G
Sbjct: 185 AIPCRTSLTAAGCYLSPAPGSKG 207


>At3g24560.2 68416.m03084 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 660

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 398 AMPCRTGLFSKICFNGPAAGCSG 466
           A+PCRT L +  C+  PA G  G
Sbjct: 389 AIPCRTSLTAAGCYLSPAPGSKG 411


>At3g24560.1 68416.m03085 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 462

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 398 AMPCRTGLFSKICFNGPAAGCSG 466
           A+PCRT L +  C+  PA G  G
Sbjct: 191 AIPCRTSLTAAGCYLSPAPGSKG 213


>At1g08710.1 68414.m00967 F-box family protein similar to ESTs
           gb|T22270 and gb|T76886 ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 274

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = -1

Query: 396 GAVKKIQTTVNNPVKPRDSEVVEETKSE 313
           G  +K++T+++ P KPR++E + +++SE
Sbjct: 247 GKRRKLKTSIDFPAKPRNTEKLFQSESE 274


>At5g45360.1 68418.m05569 F-box family protein  similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 316

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -1

Query: 648 AFWPLFWCTKFSI*LPKPLTTKSAWCSVY*ETR*SDQYDRSRECRS 511
           + W   +C ++ + LP     +SAW  +Y +    D  +  R C S
Sbjct: 109 SLWRRLYCIRWGLTLPSRKLRESAWKKLYIDRDEQDMIELVRTCPS 154


>At4g22320.1 68417.m03227 expressed protein 
          Length = 238

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 495 SESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNPVK-PRDSEVVEETK 319
           SESN P+E      A  P ++ F+  P+   +    KK  T +    K   D ++ E+ K
Sbjct: 92  SESNSPSEDTVATVAEDPPRRRFKYVPI--AVLEEQKKEITEIEEDDKIEEDDKIDEDNK 149

Query: 318 SEQE 307
            EQE
Sbjct: 150 VEQE 153


>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
           subunit (TFIIF-alpha) family protein low similarity to
           SP|Q05913 Transcription initiation factor IIF, alpha
           subunit (TFIIF-alpha) (Transcription factor 5, large
           chain) (TF5A) {Drosophila melanogaster}; contains Pfam
           profile PF05793: Transcription initiation factor IIF,
           alpha subunit (TFIIF-alpha)
          Length = 543

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 504 AKPSESNPPTETKPEQPAAGPLKQIFENSPVLQGIAGAVKKIQTTVNNP 358
           AKP+ S PP  T P +P+ G  K    N    +  + +V+K   T N+P
Sbjct: 395 AKPAPSGPPRGTPPAKPSKGKRKL---NDGDSKKPSSSVQKKVKTENDP 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,650,348
Number of Sequences: 28952
Number of extensions: 219835
Number of successful extensions: 778
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)