Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30773
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   7.8  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   7.8  

>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 291 DLHVFQIFTYIVPFRYEKIKTVPMNTGTYTRKI-SQVSFVLLIRTERP 151
           D H+  IFT   PF ++          T T ++  Q+  +L +R + P
Sbjct: 523 DAHINSIFTLAEPFAFDAPDVYDFGDQTITARVKQQIPVMLDLRLQPP 570


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 276 QIFTYIVPFRYEKIKTVPMNTGTYTRKISQVSFVLLIRTERPVFGPATSYRQEI 115
           Q FT  V        +V +N+ T T   SQ+S + +  +  PVF P+ S   ++
Sbjct: 127 QAFTSTVDISSSTSSSV-INSPTGTAVSSQISTLSMSPSSTPVFSPSASVSSKV 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,824
Number of Sequences: 5004
Number of extensions: 39741
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)