Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30773
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0411 - 18739279-18739902,18741471-18741671                       30   2.0  
08_01_0108 - 791835-792398                                             29   2.7  
11_06_0240 + 21640163-21640172,21641062-21641384,21641395-21641565     28   6.2  
10_08_0142 - 15169825-15170538                                         28   6.2  
02_03_0068 + 14711891-14712418                                         28   6.2  
06_01_0021 - 214401-214613,214707-214790,214887-215041,215165-21...    28   8.1  
05_02_0049 - 6083364-6084111,6084140-6084246                           28   8.1  
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871...    28   8.1  

>02_03_0411 - 18739279-18739902,18741471-18741671
          Length = 274

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 399 PEARERTTSGQRSQRARHRGGLSAGGVLARASRQTLA-WRRASPVG 533
           P +R  ++S +R  RAR RGG   GG  A AS  T + +   S VG
Sbjct: 96  PASRSASSSSRRCSRARGRGG--GGGAAAAASTTTSSGYTSVSSVG 139


>08_01_0108 - 791835-792398
          Length = 187

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 405 ARERTTSGQRSQRARHRGGLSAGGVLARASRQTLAWRR 518
           A ER +S +R +R R RGG      +  A ++  +WRR
Sbjct: 78  ADERRSSWRRLRRPRRRGGARGRAEVVVAGKRRRSWRR 115


>11_06_0240 + 21640163-21640172,21641062-21641384,21641395-21641565
          Length = 167

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 420 TSGQRSQRARHRGGLSAGGVLARASRQTLAW 512
           + G+R    R RGG +A GV+A  +  T+ W
Sbjct: 12  SGGRRLVGVRRRGGAAASGVVATYNPDTINW 42


>10_08_0142 - 15169825-15170538
          Length = 237

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 399 PEARERTTSGQRSQRARHRGGLSAGGVLARASRQTLAWRRASPVGPGARPSSS 557
           P  R    SG        +GG + GG L R S++ +  R A+     A PS++
Sbjct: 145 PPRRAHDGSGMSRSPEAEKGG-AVGGYLRRISKRLMTTRGATAAADAAAPSAT 196


>02_03_0068 + 14711891-14712418
          Length = 175

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +3

Query: 414 RTTSGQRSQRARHRGGLSAGGVLARASRQTLAWRRA 521
           R TS  R +R   R G ++GG   R +RQ    RRA
Sbjct: 33  RETSSSRHRREEERVGWASGGSSGRGARQREEERRA 68


>06_01_0021 -
           214401-214613,214707-214790,214887-215041,215165-215234,
           215334-215509,215631-215803,216715-216938
          Length = 364

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -2

Query: 294 QDLHVFQIFTY---IVPFRYEKIKTVPMNTGTYTRKISQVSFVLLIRTERP 151
           QD   F +  +    VP++Y+  K  P NT  +      V+ VL   T++P
Sbjct: 173 QDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVLFDHADPSVNTVLTAPTDKP 223


>05_02_0049 - 6083364-6084111,6084140-6084246
          Length = 284

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = +3

Query: 432 RSQRARHRGG-----LSAGGVLARASR--QTLAWRRASPVGPGARPSSSTSRAED*QPSK 590
           +SQ  R R G       A    A A R   + +WR +SP  P AR + ST+R     PS+
Sbjct: 33  KSQMRRRRSGGAGVPADAASAAASAGRCWSSSSWR-SSPPSPAARSTCSTARTAPASPSR 91


>02_04_0562 -
           23886272-23886357,23886456-23886571,23887045-23887127,
           23887683-23887829,23887946-23887993,23888166-23888384,
           23889370-23889541,23889636-23889700,23890386-23890512,
           23891358-23891450,23891520-23891629,23891722-23891868,
           23892161-23892473,23892580-23893178
          Length = 774

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 399 PEARERTTSGQRSQRARHRGGLSAGGVLARASRQTLAWRRASPVGPGARPSSSTSRAE 572
           PE  ++   G  S +A+ +       V A  S     W R   +GP  R  +S SRA+
Sbjct: 145 PEECDQAVEGLSSAKAKAKAKQVQESVKAGQSIVRKFWARLLGIGPALRAVASMSRAD 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,676,835
Number of Sequences: 37544
Number of extensions: 273914
Number of successful extensions: 1023
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)