Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30773
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)                 29   2.7  
SB_20505| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.8  
SB_35841| Best HMM Match : rve (HMM E-Value=0.14)                      28   8.3  
SB_5187| Best HMM Match : Peptidase_A16_N (HMM E-Value=1.3)            28   8.3  
SB_57523| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_2213| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8e-26)          28   8.3  

>SB_11644| Best HMM Match : Pox_A32 (HMM E-Value=0.026)
          Length = 1532

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 411  ERTTSGQR-SQRARHRGGLSAGGVLARASRQTLAWRRASPVGPGARPSSSTSRAED 575
            ER TS +  + R +H G + AG  LA+ +R   A + A  V   + P    +RA+D
Sbjct: 1227 ERITSPEPPATRPKHPGRVEAGMRLAKWNRINRAKKEALRVAQSSEPKGLRARADD 1282


>SB_20505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 325 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAE 459
           N+E  W GP W   P   P    L Q +E   E +  +    LA AE
Sbjct: 80  NAEMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAE 126


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -2

Query: 300 DRQDLHVFQIFTYIVPFRYEKIKTVPMNTGTYTRKISQVSFVLLIRTERPVFGPATS 130
           D +D HVF+I T   PFR     TV +         S+ ++ LLIR    V    TS
Sbjct: 419 DAKDTHVFEILTQGSPFRIHN-STVIVGNARRLDFESRNTWTLLIRVTDQVAASVTS 474


>SB_35841| Best HMM Match : rve (HMM E-Value=0.14)
          Length = 467

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 325 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAE 459
           N++  W GP W   P   P    L Q +E   E +  +    LA AE
Sbjct: 70  NADMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAE 116


>SB_5187| Best HMM Match : Peptidase_A16_N (HMM E-Value=1.3)
          Length = 422

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 325 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAE 459
           N++  W GP W   P   P    L Q +E   E +  +    LA AE
Sbjct: 80  NADMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAE 126


>SB_57523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 325 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAE 459
           N++  W GP W   P   P    L Q +E   E +  +    LA AE
Sbjct: 80  NADMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAE 126


>SB_2213| Best HMM Match : Peptidase_A17 (HMM E-Value=2.8e-26)
          Length = 840

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +1

Query: 325 NSEKAWSGPTWREAPAPVPTEAALAQRLE--RELRAAKGASELATAE 459
           N++  W GP W   P   P    L Q +E   E +  +    LA AE
Sbjct: 560 NADMWWKGPEWLSEPGCWPEGIVLEQSVESKAEAKLVRQVLSLAVAE 606


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,727,902
Number of Sequences: 59808
Number of extensions: 294538
Number of successful extensions: 778
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)