Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30773
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    32   0.42 
At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transfera...    29   2.9  
At3g05770.1 68416.m00648 expressed protein                             29   3.9  
At3g42690.1 68416.m04439 Ulp1 protease family protein contains P...    28   5.1  
At1g54300.1 68414.m06190 hypothetical protein                          28   5.1  
At2g41350.1 68415.m05104 expressed protein                             27   9.0  
At2g39580.1 68415.m04855 expressed protein                             27   9.0  

>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 423 SGQRSQRARHRGGLSAGGVLARASRQTLAWRRASPVGPGAR-PSSSTSRA 569
           S +  QR+RH  G S     AR   ++LA  R S  G G+R PSSS  RA
Sbjct: 483 SSRSDQRSRHGAGRSGRSSFARLPPRSLASSR-SARGAGSRAPSSSAKRA 531


>At2g36970.1 68415.m04534 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 179 LYC*FALNDRFSDRRLVIVKRSMGI*KCPKLTTASDLIS 63
           L C   L D+F++R+LV+    +GI  C K T   D +S
Sbjct: 385 LLCYPLLTDQFTNRKLVVDDWCIGINLCEKKTITRDQVS 423


>At3g05770.1 68416.m00648 expressed protein
          Length = 410

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 196 FSSISSGIHRNSFNFFVSKRYNISKNLENMEILPVTNQ 309
           FS  + G  RNS++   S  YN    L  M+ +P ++Q
Sbjct: 287 FSMANGGWQRNSYSHVNSLNYNTDNGLLGMQAIPPSSQ 324


>At3g42690.1 68416.m04439 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At2g11345, At4g04130
          Length = 1009

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
 Frame = +1

Query: 196 FSSISSGIHRNSFNFFVSKRYNISKNLENMEILPVTNQFNVGFNSEKAWSGPTWREAP-A 372
           ++S+SSGI  +S    +S R N    +  + +      + + + S K  S     E P +
Sbjct: 518 YASLSSGISSSSMKNGLSDRPNRKDCVSTVNLGTSDGTWEL-YGSAKTISEKIATEVPPS 576

Query: 373 PVPTEAA---LAQRLERELRAAKGASELATAEVL--VPA 474
           P+PTEAA   ++  +E ++ A +G + +   E +  +PA
Sbjct: 577 PMPTEAAKEPMSIAVEDDILAGEGVTAMDIPEKIAEIPA 615


>At1g54300.1 68414.m06190 hypothetical protein
          Length = 314

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 196 FSSISSGIHRNSFNFFVSKRYNISKNLENMEILPVTNQ-FNVGFNSEKAWSG 348
           FS  + G  RNS++   S  YN +     M+  P ++Q  N  +N++  ++G
Sbjct: 200 FSMANGGWQRNSYSPVNSLNYNTANEFFGMQATPPSSQVVNEHYNTQNDFTG 251


>At2g41350.1 68415.m05104 expressed protein
          Length = 298

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 15  GGSYSEPRASDEALWLRDQI*C-GRELRTFSYSHRSL 122
           GGS    R S+   WL  Q    G+E+  F Y+HRS+
Sbjct: 16  GGS-DAARISEVKAWLTSQFEAVGKEVPNFEYTHRSI 51


>At2g39580.1 68415.m04855 expressed protein
          Length = 1567

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 118 DRWEYENVLSSRPHQI*SRNHRASSLALGSLY 23
           D W YE+VL+ R  QI  ++  A   +  SLY
Sbjct: 882 DSWSYESVLAQRHGQIWCKHFSACLASSNSLY 913


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,320,202
Number of Sequences: 28952
Number of extensions: 209218
Number of successful extensions: 487
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)