Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30772
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 31 0.12
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.28
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 30 0.36
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 29 0.64
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.84
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 28 1.1
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 28 1.5
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 27 1.9
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 3.4
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 3.4
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 27 3.4
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 3.4
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.5
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 26 4.5
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 26 4.5
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 26 5.9
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 25 7.8
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 7.8
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 7.8
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 25 7.8
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 7.8
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Frame = +1
Query: 271 ESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPD---VEKNATAL 441
+ +L N + + L + +A KA+++LEQ+ + E L K H + E+ +
Sbjct: 36 KKLLNNKNEYLRQLS-EINEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSF 94
Query: 442 REKLQAAVQNTVQESQKL 495
+EKL A ++ + S++L
Sbjct: 95 QEKLDAMLKRKQKLSEEL 112
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 247 QQGWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 396
+Q KDG+++ +LN FAK L + + +A + + IE+++ E
Sbjct: 107 KQPKKDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 29.9 bits (64), Expect = 0.36
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 256 WKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRK-AHPDVEKNA 432
+ D S S +L A AK A DA A E +++ +IER+A K A + E+ A
Sbjct: 132 YNDRSTSEALELEARAKK---AAQDAE-LASERAREAQSSIERSASLREKQAREEAERAA 187
Query: 433 TALRE 447
TALRE
Sbjct: 188 TALRE 192
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 29.1 bits (62), Expect = 0.64
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Frame = +1
Query: 271 ESVLQQLNAFAKSLQGALGDANGK---AKEALEQSRQNIERTAEELRKAHPDVEK-NA-- 432
E +L+QL+ + L+ N K AK+ ++ R+ + +E K + EK NA
Sbjct: 334 EQLLKQLSNAQEKLEHEQHSRNQKLEAAKQRMDNIREEYKVITQERNKKIQETEKKNAMI 393
Query: 433 -------TALREKLQAAVQNTVQESQKLAKKVSRTCRRLMRN 537
+RE+L++ + + E +KL V L+RN
Sbjct: 394 EMTEQKIAGMREELESQISSITMEFEKLKSHVELYIAELLRN 435
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 28.7 bits (61), Expect = 0.84
Identities = 16/79 (20%), Positives = 37/79 (46%)
Frame = +1
Query: 292 NAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQN 471
N + ++ AL + KA + LE+ ++ E + EE+ H + T+ + + +
Sbjct: 337 NLVSLAIYEALYEKFLKACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEK 396
Query: 472 TVQESQKLAKKVSRTCRRL 528
+QE ++ K + ++L
Sbjct: 397 IIQEKSRVDKMIDEYRQKL 415
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +1
Query: 247 QQGWKDGSESVLQQLNAFAKSLQGALG--DANGKAKEA--LEQSRQNIERTAEELRKAHP 414
QQGW + + Q+ FAK G++ DA + +E E + E+ ELRK
Sbjct: 183 QQGWSNMMLYLRYQVEEFAKKKWGSMEALDAEFERREVQKKEMKEKKFEKQLLELRKRTR 242
Query: 415 DVEKNATALREK 450
+ ++REK
Sbjct: 243 TSNYSRMSIREK 254
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -3
Query: 399 ELLGRALDVLPRLFQSLLGLAVRVSERSLETLGEGVELLQHG----LGAVLPTLLKSCA 235
ELL +LP + +LL L +S +++ + E +L+ L +LP LLK C+
Sbjct: 318 ELLSVLKTLLPGILLALLSLRTTLSSSAIQLIKEMAIILKSNIDPFLELILPNLLKVCS 376
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 370 ASTVPKPPWPCRSRLRALPG 311
AST+ K PWP + L +PG
Sbjct: 38 ASTLEKEPWPASTALLVMPG 57
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 216 RSPSQRTHRTSARLEGRLRVRAATAQRLRQES 311
+SP+QRT RLE R R R Q L+ S
Sbjct: 517 KSPNQRTANAKKRLEERRRRRKLKLQELQLNS 548
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 397 LRKAHPDVEKNATALREKLQAAVQNTVQE 483
L AH D+E T++RE+L++ + +E
Sbjct: 267 LDSAHSDLELELTSIRERLESLILEKQEE 295
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +1
Query: 307 SLQGALGDANGKAKEALEQSRQNIE-----RTAEELRKAHPDVEKNATALREKLQAA 462
S++ L + N + KE +E + RT +E EKN LRE+L+ A
Sbjct: 520 SMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTA 576
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 134 RRDAPDFFKDIEHHTKEFHKTLEQQFNSLT 223
++ DFFK + ++ H TL ++ NSL+
Sbjct: 56 KKSEQDFFKMLSSRDRDAHSTLRKRSNSLS 85
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = +1
Query: 268 SESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALRE 447
S + + A K L GA KAKE ++ R +RTA E+RK +E+ R
Sbjct: 143 SRRISGMILAHFKRLSGA---DEKKAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRA 199
Query: 448 KLQAAVQNTVQESQ 489
+ A Q + Q
Sbjct: 200 ERAAEAQRVAGKEQ 213
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 4.5
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 47 PHSVSRQYIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTK 226
P S S + A + L + V R F + +EH+ K+LE+Q + L +
Sbjct: 171 PSSSSCNLVNANSLDIYLNINNLKKSKSVPRLRGQFMEPVEHN-HPLSKSLEEQSSFLEQ 229
Query: 227 SKDA 238
SKDA
Sbjct: 230 SKDA 233
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/63 (23%), Positives = 35/63 (55%)
Frame = +1
Query: 340 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSRTC 519
K+++ LE S Q +E E + P+V++ +EK ++ V+ +E +K+++ + +
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-EKISRNLRSSS 189
Query: 520 RRL 528
R +
Sbjct: 190 RSI 192
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 355 LEQSRQNIERTAEELRKAHPDVEK 426
+EQ+R E T E++++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 146 PDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKVGRT 265
PD D++++ K+ ++++ F T + +F+K G T
Sbjct: 64 PDKEFDLDYYLKDETESIQSPFEGFTAQPNFSNFNKQGNT 103
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 250 QGWKDGSESVLQQLNAFAKSLQG 318
Q K GSESVL QLN L+G
Sbjct: 37 QDEKSGSESVLSQLNRVLMYLKG 59
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 334 NGKAKEALEQSRQNIERTAEELRKAHPDVEKN 429
N K KE E++ + EELR+A PD E++
Sbjct: 22 NEKLKEDFEENVSIDVKIHEELRRALPDYEES 53
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Frame = +3
Query: 483 IPEVSEEGVSNVQ--ETNEKLAPKIKAAYDDFAKN 581
+ ++S+ VS+++ +TNE+L + K+ D+F K+
Sbjct: 438 LDDLSDPSVSSIKGNKTNEELEKEFKSTSDNFGKH 472
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 7.8
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Frame = +1
Query: 328 DANGKAKEALEQSRQNIERT--------AEELRKA-HPDVE----KNATALREKLQAAVQ 468
D+ KAK LEQ+R +ERT A EL+ A P++E K L EK + V
Sbjct: 403 DSIKKAKTELEQARIELERTQREGNYARASELQYAIIPELERSVPKEEKTLEEKKPSMVH 462
Query: 469 NTVQESQKLAKKVSR 513
++V S +A VSR
Sbjct: 463 DSV-TSDDIAVVVSR 476
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 7.8
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Frame = +1
Query: 193 DFRTTV*LAHQVKGRTGLQQGWKDGSESVLQQ---------LNAFAKSLQGALGDANGKA 345
++RT + +K + GWK+ S L Q +N F + LQG+ G
Sbjct: 681 EYRTYIATDPVIKWFWEIIAGWKNEDRSKLLQFATGTSRIPVNGF-RDLQGSDGPRKFTI 739
Query: 346 KEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTV 477
++A + + T R PD T L EKL AV+NTV
Sbjct: 740 EKAGTPDQLPVAHTCFN-RLDLPDYPSKDT-LHEKLSLAVENTV 781
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,116,444
Number of Sequences: 5004
Number of extensions: 34783
Number of successful extensions: 166
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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