Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30771X
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 139 2e-34
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 139 2e-34
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 6.5
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 6.5
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 25 6.5
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 6.5
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 25 8.5
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce... 25 8.5
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 139 bits (337), Expect = 2e-34
Identities = 62/84 (73%), Positives = 76/84 (90%)
Frame = +3
Query: 3 FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTV 182
FDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV+LT+
Sbjct: 5 FDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVKLTI 64
Query: 183 QNRQAQIAVVPSAAALIIRALKEP 254
QNRQA ++VVPSA+AL+I+ALKEP
Sbjct: 65 QNRQAAVSVVPSASALVIKALKEP 88
Score = 91.9 bits (218), Expect = 5e-20
Identities = 39/70 (55%), Positives = 58/70 (82%)
Frame = +2
Query: 254 SRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLCGSVKEILSTAQSVGCTVEGRPP 433
+RDRKK KN+ H+GN+SL+++I +A+ MR +S+A+ L G+VKEIL TA SVGCTV+G+ P
Sbjct: 89 ARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNP 148
Query: 434 HDLIDDINSG 463
HD+ +I++G
Sbjct: 149 HDVQKEIDNG 158
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 139 bits (337), Expect = 2e-34
Identities = 62/84 (73%), Positives = 76/84 (90%)
Frame = +3
Query: 3 FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTV 182
FDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV+LT+
Sbjct: 5 FDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVKLTI 64
Query: 183 QNRQAQIAVVPSAAALIIRALKEP 254
QNRQA ++VVPSA+AL+I+ALKEP
Sbjct: 65 QNRQAAVSVVPSASALVIKALKEP 88
Score = 91.9 bits (218), Expect = 5e-20
Identities = 39/70 (55%), Positives = 58/70 (82%)
Frame = +2
Query: 254 SRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLCGSVKEILSTAQSVGCTVEGRPP 433
+RDRKK KN+ H+GN+SL+++I +A+ MR +S+A+ L G+VKEIL TA SVGCTV+G+ P
Sbjct: 89 ARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNP 148
Query: 434 HDLIDDINSG 463
HD+ +I++G
Sbjct: 149 HDVQKEIDNG 158
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.0 bits (52), Expect = 6.5
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 299 CCRCV*YFSAFYDHERLLKGSDDKG-CCRGNNSYLGLSVLNCQLHSDLETLPVT 141
C +C ++ DHE S G CC N+ + ++C++HS E ++
Sbjct: 121 CVKCF-RATSHKDHETSFTVSAGSGGCCDCGNAAAWIGDVSCKIHSHEEDATIS 173
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 70 DDVAPTSPPTHRKFTILI 17
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 6.5
Identities = 8/36 (22%), Positives = 22/36 (61%)
Frame = +3
Query: 201 IAVVPSAAALIIRALKEPLVIVKSRKISNTTATSPL 308
+ + P++ ++ ++ EP +V++ + NT+ SP+
Sbjct: 234 LRLYPNSTCIVYQSSNEPNDVVRNFSVQNTSLFSPM 269
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.0 bits (52), Expect = 6.5
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 213 PSAAALIIRALKEPLVIVKSRKISNTTATS 302
PS A L+ RAL+ +++K ++SNTT +S
Sbjct: 178 PSTAPLV-RALQTIELLLKKYEVSNTTKSS 206
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 8.5
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +3
Query: 90 PLGLS--PKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAV 209
PLG+ PKK+ +++A+ G+K+T +VQ+ I V
Sbjct: 381 PLGVHMLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPV 422
>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 395
Score = 24.6 bits (51), Expect = 8.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 389 STAQSVGCTVEGRPP 433
S +SVGC VEG PP
Sbjct: 16 SHCKSVGCIVEGCPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,653
Number of Sequences: 5004
Number of extensions: 42911
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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