Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30770
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   113   1e-26
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   113   1e-26
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   5.8  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   5.8  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   7.7  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   7.7  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  113 bits (273), Expect = 1e-26
 Identities = 52/72 (72%), Positives = 61/72 (84%)
 Frame = +2

Query: 38  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 217
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 218 IVVNLTGRLNKC 253
           IV+ L GR+NKC
Sbjct: 61  IVIQLNGRINKC 72



 Score = 84.2 bits (199), Expect = 9e-18
 Identities = 40/57 (70%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
 Frame = +1

Query: 256 VISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 423
           VISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 74  VISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  113 bits (273), Expect = 1e-26
 Identities = 52/72 (72%), Positives = 61/72 (84%)
 Frame = +2

Query: 38  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 217
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 218 IVVNLTGRLNKC 253
           IV+ L GR+NKC
Sbjct: 61  IVIQLNGRINKC 72



 Score = 84.2 bits (199), Expect = 9e-18
 Identities = 40/57 (70%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
 Frame = +1

Query: 256 VISPRFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 423
           VISPRF+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 74  VISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 328 FGYLVLTTSGGIMDHEEARRKHLGGKIL 411
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 224 VNLTGRLNKCVSFHLVLMFPSTILKDGLICS 316
           V+L  +      F++ + FPS ++KDG+  S
Sbjct: 88  VSLNSKKEPLSKFNVKIHFPSNVMKDGVAFS 118


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 317 PHDSLVT*SLQQVVASWTMKKPE 385
           P+ S +T SL Q +  W +++PE
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPE 176


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 171 PCFIITVKNLTMTLEQGLMRTCLFPRFSALCIDFKASLNTFIRTMAK 31
           P  +I   N   +L+  L R   F R   L +  + +    +RTMAK
Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,352
Number of Sequences: 5004
Number of extensions: 32153
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)