Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30770
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823          126   9e-30
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...   125   2e-29
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           78   3e-15
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    31   0.47 
03_06_0497 - 34332310-34334415                                         29   1.9  
09_06_0136 - 21074420-21074746,21075905-21077026                       27   5.8  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score =  126 bits (304), Expect = 9e-30
 Identities = 58/72 (80%), Positives = 66/72 (91%)
 Frame = +2

Query: 38  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 217
           MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 218 IVVNLTGRLNKC 253
           IVV L GRLNKC
Sbjct: 61  IVVELNGRLNKC 72



 Score = 97.9 bits (233), Expect = 4e-21
 Identities = 44/57 (77%), Positives = 51/57 (89%), Gaps = 1/57 (1%)
 Frame = +1

Query: 256 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 423
           VISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 74  VISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score =  125 bits (302), Expect = 2e-29
 Identities = 57/72 (79%), Positives = 66/72 (91%)
 Frame = +2

Query: 38  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 217
           MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60

Query: 218 IVVNLTGRLNKC 253
           IVV L GRLNKC
Sbjct: 61  IVVELNGRLNKC 72



 Score = 87.0 bits (206), Expect = 7e-18
 Identities = 41/53 (77%), Positives = 46/53 (86%), Gaps = 1/53 (1%)
 Frame = +1

Query: 256 VISPRFDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 411
           VISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 74  VISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 34/67 (50%), Positives = 48/67 (71%)
 Frame = +2

Query: 53  VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 232
           +L+DAL+++ NAE+RGK   L++P S V+V FL +M   GYI +FE++D HR GKI V L
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64

Query: 233 TGRLNKC 253
            GR+  C
Sbjct: 65  HGRIKDC 71



 Score = 63.7 bits (148), Expect = 7e-11
 Identities = 26/64 (40%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
 Frame = +1

Query: 232 HRQTKQVCVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKI 408
           H + K    ++ R D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA ++++GG++
Sbjct: 65  HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124

Query: 409 LGFF 420
           LG+F
Sbjct: 125 LGYF 128


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 31.1 bits (67), Expect = 0.47
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +2

Query: 194 VDDHRAGKIVVNLTGRLNK 250
           VDDH++G+I++   GRLNK
Sbjct: 912 VDDHKSGEIILEFDGRLNK 930


>03_06_0497 - 34332310-34334415
          Length = 701

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 179 GEFEIVDDH-RAGKIVVNLTGRLNKCVSFHLVLMFPSTILKDGLICSPHDSLVT*SLQQV 355
           G  E+V +H +AG+I      R+  C    L       +LK GL+CS  D     S++QV
Sbjct: 575 GLVELVLEHWKAGEITAARDPRIGDCDEDDL-----EVVLKLGLLCSHPDPRRRPSMRQV 629

Query: 356 VASWTMKKPEENTLEE 403
           V       P   TL E
Sbjct: 630 VQILEGAAPAPETLPE 645


>09_06_0136 - 21074420-21074746,21075905-21077026
          Length = 482

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 188 EIVDDHRAGKIVVNLTGRLNKCVS 259
           EI+D H   K+VV +  R+ +CVS
Sbjct: 346 EILDQHHFDKLVVPVCSRIARCVS 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,902,606
Number of Sequences: 37544
Number of extensions: 208822
Number of successful extensions: 379
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)