Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30769
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   5.0  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   6.7  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   8.8  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 229 LNKHNDSKNNHSPNEFQEKSNMING 155
           LNKH ++ N H P + +   +++NG
Sbjct: 345 LNKHIETTNTHLPEDRKVSLSLVNG 369


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 285 FLINSARSKPIKKRYSELNLKKIIIVIRY 371
           FL+N+AR   IK+   +  ++K++ V++Y
Sbjct: 545 FLLNAARLNSIKEEPEKKVVEKVVEVVKY 573


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 691 ASKSTSYRLQSQGFTSEQVSWLH*QWGRIQSLKY 590
           AS++  +   S   T+E++  +  Q+G I+S+KY
Sbjct: 498 ASRNVYFSHISDSLTTEELELILRQYGEIESIKY 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,907
Number of Sequences: 5004
Number of extensions: 63643
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)