Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30769
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    29   5.3  
02_04_0305 - 21873195-21873788,21873878-21874019,21874597-218747...    29   5.3  

>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 226 NKHNDSKNNHSPNEFQEKS 170
           N+++DSK NHSPNE    S
Sbjct: 495 NENSDSKRNHSPNESAHSS 513


>02_04_0305 -
           21873195-21873788,21873878-21874019,21874597-21874782,
           21874911-21875058,21875172-21875269,21875384-21875469,
           21875741-21875825,21879298-21879478,21879682-21879874,
           21881429-21881566,21881892-21881900
          Length = 619

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -1

Query: 232 MLNKHNDSKNNHSPNEFQEKSNMINGINGLMNDTMVYLLWTQYAGIHCVTFDL 74
           +L  H    ++    +F E+S+  + I+G +NDT   L   + + I C+  DL
Sbjct: 253 LLRMHGYDISSDGMAQFVEQSSFDDSIHGYLNDTKALLELYRSSQIRCLEDDL 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,306,488
Number of Sequences: 37544
Number of extensions: 348868
Number of successful extensions: 670
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)