Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30769
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19760.1 68416.m02501 eukaryotic translation initiation facto...    28   5.8  
At5g58630.1 68418.m07347 expressed protein                             28   7.7  

>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative / DEAD box RNA helicase,
           putative contains DEAD/DEAH helicase domain; similar to
           RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
           identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
          Length = 408

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +2

Query: 230 HEIREIRSSIQSQPVHILISYQQRTLKTY*KEIFRIKSQKNNHSDTLFCSKLNT 391
           HEI E+ S   ++PV IL+   + TL+   K+ F    ++    DTL C   +T
Sbjct: 220 HEILEMTSKFMTEPVKILVKRDELTLEGI-KQFFVAVEKEEWKFDTL-CDLYDT 271


>At5g58630.1 68418.m07347 expressed protein 
          Length = 372

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 256 DSVTTCSHTNFLSTAHAQNLLKRD 327
           DS+     T FLS +H+ N LKRD
Sbjct: 78  DSIPVIDKTRFLSRSHSVNHLKRD 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,483,797
Number of Sequences: 28952
Number of extensions: 305248
Number of successful extensions: 604
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)