Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30767
(360 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 116 8e-28
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 111 2e-26
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 93 9e-21
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 32 0.031
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 29 0.22
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 28 0.38
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 26 1.5
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 26 2.0
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 3.5
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 24 6.2
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 24 6.2
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 24 8.2
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ... 24 8.2
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 116 bits (280), Expect = 8e-28
Identities = 50/81 (61%), Positives = 66/81 (81%)
Frame = +1
Query: 1 GYPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFK 180
G PN K+V EL+YKRGF K++ QRIP++ N+I E L K++I+ VEDLIHEI+TVG FK
Sbjct: 144 GIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFK 203
Query: 181 YASNFLWPFKLNNPTGGWRKK 243
A+NFLWPFKL++P GGWR++
Sbjct: 204 QAANFLWPFKLSSPLGGWRER 224
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 111 bits (268), Expect = 2e-26
Identities = 47/81 (58%), Positives = 65/81 (80%)
Frame = +1
Query: 1 GYPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFK 180
G PNLK+V EL+YKRGF K++ QRI ++ N+I E L K++I+ +EDLIHEI+TVG FK
Sbjct: 145 GIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFK 204
Query: 181 YASNFLWPFKLNNPTGGWRKK 243
A+NF+WPF+L++P GGWR +
Sbjct: 205 QAANFIWPFQLSSPLGGWRDR 225
Score = 31.1 bits (67), Expect = 0.054
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 228 WLAQEDHSLVDGGDFGNREDKINDLLRRMV 317
W ++ ++GGD G R++ IN L+R+M+
Sbjct: 222 WRDRKFKHFIEGGDAGKRDEHINSLVRKML 251
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 93.5 bits (222), Expect = 9e-21
Identities = 39/71 (54%), Positives = 54/71 (76%)
Frame = +1
Query: 1 GYPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFK 180
G PNL SV EL+YKRGF K++GQRI ++ N++ E+ L K+++I +ED+IHEI+ VG FK
Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFK 202
Query: 181 YASNFLWPFKL 213
+ FLWPF L
Sbjct: 203 EVTKFLWPFTL 213
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 31.9 bits (69), Expect = 0.031
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 10 NLKSVSELVYKRGFAKLSGQRIPITSNSIDEK-RLHKHNIICVEDLIHEIFTVGEKFKYA 186
N KSV + G L+G +I S+ +D + + K ++ +E L H++ + K+A
Sbjct: 143 NAKSVERIAEVSGNYALAGAQIISPSDCMDGRVKAIKQKLVELE-LSHKVCVISYSAKFA 201
Query: 187 SNFLWPFK 210
S F PF+
Sbjct: 202 SGFFGPFR 209
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 29.1 bits (62), Expect = 0.22
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 239 LRQPPVGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 105
LR P L L+GH + L +SP + SST +C+W L
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 28.3 bits (60), Expect = 0.38
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 258 RLMNGLLAPTTSWIVQFEGPQEITRVLELFSNSE 157
+ MNGL P W + GP + R++ F E
Sbjct: 73 KAMNGLPGPYVKWFLNSVGPDGLYRMVSAFDTKE 106
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 1.5
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = -2
Query: 218 LFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSSMLLEVIGI 72
LF+L G L ++ + T+K SW ++ + L S ++++ I
Sbjct: 76 LFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIATCLLSISTFIDMLAI 124
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 2.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 174 LFSNSEDLMDEVLNTDNVVFMEPLFINAVGSD 79
LF SED ++V +T + PL I G+D
Sbjct: 54 LFGESEDYRNKVFSTRTIPEERPLIIQFCGND 85
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 3.5
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Frame = -2
Query: 242 FLRQPPVGLFNL---KGHRKLLAYLNFSP-TVKISWMRSSTQIMLCLWSLFSSMLLEVIG 75
+LR+P + N KG L+ +F+ T + S + S LC F+ E IG
Sbjct: 854 YLRKPHMSRENFGISKGSGGLIGSFDFNKFTRQASKVHGSWISSLCSSQAFA----EFIG 909
Query: 74 IRCPLSLANPRL 39
RC L L +PR+
Sbjct: 910 DRCELDLNDPRV 921
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 24.2 bits (50), Expect = 6.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 198 QEITRVLELFSNSEDLMDEVLNTDNVVFMEPLFINAVGSDWYTLST 61
QE ++ L S+++ L+D ++ M+P+ N+ SD +TL T
Sbjct: 124 QETSKDLCRSSSTQHLLDHQTTDSTIIDMKPVSTNS-KSDVFTLYT 168
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 24.2 bits (50), Expect = 6.2
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 186 RVLELFSNSEDLMDE--VLNTDNVVFMEP 106
RV E+F +S DL++E + DNV EP
Sbjct: 300 RVAEIFKDSPDLLEEFKLFLPDNVDSTEP 328
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 23.8 bits (49), Expect = 8.2
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -1
Query: 183 VLELFSNSEDLMDEVLNTDNVVFMEPLFINAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 4
+L +F+ +D M L T+N + + +A W TL G + F Y L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376
Query: 3 S 1
S
Sbjct: 377 S 377
>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 179
Score = 23.8 bits (49), Expect = 8.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 213 EQSNWWLAQEDHSLVDGGDFGNREDKINDLLRRMV*MDRFIIVKKSPR 356
E+SN + ED ++VD D G +++ +V D F +V+K R
Sbjct: 132 EESNPPVLVEDETIVDAEDGGAAQNQQEKQQGPIVDDDGFTVVQKRRR 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,611
Number of Sequences: 5004
Number of extensions: 31743
Number of successful extensions: 102
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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