Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30767
         (360 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      137   2e-33
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.1  
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)                   29   1.5  
SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   27   3.5  
SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)                       27   3.5  
SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)                    27   4.6  
SB_699| Best HMM Match : NOA36 (HMM E-Value=5.6)                       27   4.6  
SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)                       27   6.1  
SB_24176| Best HMM Match : Complex1_30kDa (HMM E-Value=3.9)            27   6.1  
SB_52091| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  
SB_44263| Best HMM Match : Pea-VEAacid (HMM E-Value=3.4)               26   8.0  
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.0  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  137 bits (332), Expect = 2e-33
 Identities = 62/84 (73%), Positives = 70/84 (83%)
 Frame = +1

Query: 1   GYPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFK 180
           GYPNLKSV EL+YKRG+ K+  QR+ +T NSI EK L KH IICVEDLIHEIFTVGE FK
Sbjct: 140 GYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVEDLIHEIFTVGEHFK 199

Query: 181 YASNFLWPFKLNNPTGGWRKKTIH 252
            ASNFLWPFKL++P GG+RKKT H
Sbjct: 200 EASNFLWPFKLSSPKGGFRKKTTH 223



 Score = 35.1 bits (77), Expect = 0.017
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +3

Query: 255 VDGGDFGNREDKINDLLRRM 314
           V+GGD GNREDKIN L+R M
Sbjct: 225 VEGGDHGNREDKINGLVRVM 244


>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 209 LKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSSMLLEV 81
           LKGH K    L+++P V  + + +S    +CLW + S +  +V
Sbjct: 239 LKGHTKEGYGLSWNPNVNGNLLSASDDHTICLWDISSGISKDV 281


>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
          Length = 528

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 124 IICVEDLIHEIFTVGEKFKYASNFLWPFKLNNPTGGWRKKT 246
           + C+   + E+ TV E F+   NFL  FK+  P     KKT
Sbjct: 344 LTCLCGDLSEMITVEEAFQMCENFLEKFKIFFPLDAPNKKT 384


>SB_39708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 145 IHEIFTVGEKFKYASNFLWPFKLNN 219
           ++ + T   KF YA++ LW F  NN
Sbjct: 58  LNRVITTTGKFSYATDDLWQFSCNN 82


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = +1

Query: 4   YPNLKSVSELVY--KR-GFAKLSGQRIPITSNSIDEKRLHK--HNI--ICVEDLIHEIFT 162
           Y + + V  ++Y  KR G  K   +R P   N  D  R+ K  H    + + +   E+FT
Sbjct: 121 YDDAQEVWAILYGKKRPGDPKKMKKRAPPKFNVGDRVRISKVKHVFAKVYIPNWTEEVFT 180

Query: 163 VGEKFKYASNFLWPFKLNNPTGGW 234
           VG+++   +   + ++L    G W
Sbjct: 181 VGQRYNNTTQKNYAYRLREYDGSW 204


>SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)
          Length = 200

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -1

Query: 156 DLMDEVLNTDNVVFMEP 106
           D++ E+LNTD V+F+EP
Sbjct: 181 DIICELLNTDKVLFLEP 197


>SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)
          Length = 609

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 202 PFKLNNPTGGWRKKTIH*STGETLVTAKTRSTIFSGG 312
           PF    P G  RKK    + G TL+    RS IF GG
Sbjct: 372 PFAWRKPVGLCRKKDSQAAIGRTLIPRYFRS-IFEGG 407


>SB_699| Best HMM Match : NOA36 (HMM E-Value=5.6)
          Length = 501

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +3

Query: 159 HCWRKVQVRE*FPVALQIEQSNWWLAQ----EDHSLVDGGDFGNREDKINDLLR 308
           H +RK  + E   + ++++++ W+L+Q    ED  + D  D G+ + K   L R
Sbjct: 250 HPYRKCTLTEEEKILIELDRTLWFLSQPSAYEDDEISDSEDLGDDKAKCFSLER 303


>SB_30912| Best HMM Match : SEA (HMM E-Value=1.1)
          Length = 354

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 194 KLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSSMLLEVI 78
           KL+  + F   V I+W    T+ + CLW L + + L V+
Sbjct: 12  KLVVTVQFEIRVMITWEVEYTEELRCLWRLQALIDLVVV 50


>SB_24176| Best HMM Match : Complex1_30kDa (HMM E-Value=3.9)
          Length = 103

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = -1

Query: 189 TRVLELFSNSEDLMDEVLNTDNVVFMEPLFINAVGSDWYTL 67
           T V+EL+SN+ +   +V +    + ++P+F +A GSD  T+
Sbjct: 15  TDVIELYSNAVNREGDVFDVLENLLLDPMF-DAPGSDIVTV 54


>SB_52091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1775

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = +1

Query: 4    YPNLKSVSELVY--KRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLI----HEIFTV 165
            Y + + V  ++Y  KR       +R P   N  D  R++K   +  +  I     E+FTV
Sbjct: 1094 YDDAQEVWAILYGKKRLGLPKKKKRAPPKFNVGDRVRINKVKHVFAKGYIPNWTEEVFTV 1153

Query: 166  GEKFKYASNFLWPFKLNNPTGGW 234
            G+++   +   + ++L    G W
Sbjct: 1154 GQRYNNTNQKNYAYRLREYDGTW 1176


>SB_44263| Best HMM Match : Pea-VEAacid (HMM E-Value=3.4)
          Length = 344

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 127 ICVEDLIHEIFTVGEKFKYASNFLWPFKLNN 219
           IC E++ H++   G  + Y   + +P+ + N
Sbjct: 211 ICSEEIAHQVTLGGGHWAYKGTYAYPYVIEN 241


>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 249 NGLLAPTTSWIVQFEGPQEITRV-LELFSNSEDLMDEVLNTDNVVFMEPLFINAVGSDWY 73
           NG   P  + ++    P+ ++ + +E+F      +DE +    V   E +       DWY
Sbjct: 32  NGANNPRWNKLIASTLPKGVSTIYVEIFDERSFSVDERVAWGLVQIREDVLNGETIDDWY 91

Query: 72  TLSTQLGE 49
           +LS + GE
Sbjct: 92  SLSGKQGE 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,510,282
Number of Sequences: 59808
Number of extensions: 228822
Number of successful extensions: 533
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)