Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30767
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   132   9e-32
Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    28   1.7  
AC006770-3|AAF60595.1|  508|Caenorhabditis elegans Hypothetical ...    28   2.3  
U39852-8|AAK39261.2|  113|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z92849-8|CAB07427.3|  523|Caenorhabditis elegans Hypothetical pr...    26   6.9  
U23510-9|AAC46781.1|  340|Caenorhabditis elegans Associated with...    26   9.1  
U20861-14|AAN63440.1|  245|Caenorhabditis elegans Hypothetical p...    26   9.1  
U20861-12|AAA62299.1|  403|Caenorhabditis elegans Hypothetical p...    26   9.1  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  132 bits (318), Expect = 9e-32
 Identities = 57/84 (67%), Positives = 68/84 (80%)
 Frame = +1

Query: 1   GYPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFK 180
           GYPN K++ +L+YKRG+AK+ G R+PIT N+I E+ L K NIIC+EDL HEI TVG  FK
Sbjct: 139 GYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFK 198

Query: 181 YASNFLWPFKLNNPTGGWRKKTIH 252
            A+NFLWPFKLNNPTGGW KKT H
Sbjct: 199 EATNFLWPFKLNNPTGGWTKKTNH 222



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = +3

Query: 228 WLAQEDHSLVDGGDFGNREDKINDLLRRMV 317
           W  + +H  V+GGDFGNRED+IN+LLR+MV
Sbjct: 216 WTKKTNH-FVEGGDFGNREDQINNLLRKMV 244


>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +1

Query: 4   YPNLKSVSELVYKRGFAKLSGQRIPITSNSIDEKRLHKHNIICVEDLIHEIFTVGEKFKY 183
           + +LK V +L  K     L    I  +  ++DEK+   H   CV D ++  +   E  KY
Sbjct: 327 FSSLKDVEDLHVKATETGLLHYVIDNSFANLDEKKCQPHVAKCVHDALNAAYQRHEVAKY 386

Query: 184 ASNFLWPF 207
             +  W F
Sbjct: 387 TPH--WQF 392


>AC006770-3|AAF60595.1|  508|Caenorhabditis elegans Hypothetical
           protein Y46B2A.1 protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 215 TIQLVVGARRPFISRRGRLW*PRRQDQRSSQED 313
           T++++  A R FI  +GR+   +R+D  SS ED
Sbjct: 127 TMEMLQFAMRDFIRPQGRMQVQQREDPESSSED 159


>U39852-8|AAK39261.2|  113|Caenorhabditis elegans Hypothetical
           protein K10C2.6 protein.
          Length = 113

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 200 HRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSSMLLEV 81
           H+    +LNF+ +V  S + +   I LC  S+FS ++L +
Sbjct: 27  HKNFEIFLNFTNSVSFSEILTVASIKLC--SIFSKIILNI 64


>Z92849-8|CAB07427.3|  523|Caenorhabditis elegans Hypothetical
           protein H12D21.10 protein.
          Length = 523

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 347 FFNNYKSIHLNHPPEKIVDLV 285
           FFN Y S+HLN   ++ VD++
Sbjct: 232 FFNLYASLHLNQTFDQDVDII 252


>U23510-9|AAC46781.1|  340|Caenorhabditis elegans Associated with
           ran (nuclear import/export) function protein 5 protein.
          Length = 340

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 107 LFSSMLLEVIGIRCPLSLANPRLYTNSLTLFKLGY 3
           +FS MLLE +  R  +S   P +    + L K+G+
Sbjct: 212 IFSDMLLERVDKRIRISAMGPEISGVQIFLLKIGF 246


>U20861-14|AAN63440.1|  245|Caenorhabditis elegans Hypothetical
           protein C28H8.11b protein.
          Length = 245

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 261 RRLMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPL 103
           R+L+N  +   T  +    G   +T++L L +    L+D +   D V F + L
Sbjct: 91  RKLLNNTIVDETKTLKIVSGLDRMTKILSLLTEQITLLDTMSPLDFVDFRKYL 143


>U20861-12|AAA62299.1|  403|Caenorhabditis elegans Hypothetical
           protein C28H8.11a protein.
          Length = 403

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 261 RRLMNGLLAPTTSWIVQFEGPQEITRVLELFSNSEDLMDEVLNTDNVVFMEPL 103
           R+L+N  +   T  +    G   +T++L L +    L+D +   D V F + L
Sbjct: 91  RKLLNNTIVDETKTLKIVSGLDRMTKILSLLTEQITLLDTMSPLDFVDFRKYL 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,606,763
Number of Sequences: 27780
Number of extensions: 174625
Number of successful extensions: 493
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)