Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30767
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    26   0.16 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   0.63 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   0.63 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   1.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   1.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   1.9  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   3.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   4.4  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               21   5.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   5.9  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 91  CWK*LVYVVHSAWRIHVCILTH*HSLSWG 5
           CW  + Y+V  AW I    ++    L WG
Sbjct: 71  CWMNVYYIVILAWAIFYFFMSMRSELPWG 99


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 0.63
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 264 PRRLMNGLLAPTTSWIVQFEG 202
           P +++NG   P T+W+  F G
Sbjct: 150 PGKIVNGKRVPPTNWVGVFGG 170


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 0.63
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 264 PRRLMNGLLAPTTSWIVQFEG 202
           P +++NG   P T+W+  F G
Sbjct: 150 PGKIVNGKRVPPTNWVGVFGG 170


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 245 VFLRQPPVGLFNLKG 201
           +F   PP G FN+KG
Sbjct: 225 LFYPYPPYGTFNIKG 239


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -3

Query: 91  CWK*LVYVVHSAWRIHVCILTH*HSLSW 8
           CW  + Y++  AW +   +++    L W
Sbjct: 109 CWTNIYYIIILAWALFYLLVSLRIDLPW 136


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -3

Query: 91  CWK*LVYVVHSAWRIHVCILTH*HSLSW 8
           CW  + Y++  AW +   +++    L W
Sbjct: 162 CWTNIYYIIILAWALFYLLVSLRIDLPW 189


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 92  LLEVIGIRCPLSLAN 48
           ++E+IGI C L LAN
Sbjct: 206 IVELIGIICALCLAN 220


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +1

Query: 88  NSIDEKRLHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLN 216
           ++ID++ L   ++I  +  +   F+ GE+ + +SNFL P K++
Sbjct: 120 DNIDKRNLSVTSMI-QKRALGPSFSTGERCRISSNFL-PNKMH 160


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 232 NHQLDCSI*RATGNYS 185
           N+  DC+I  +TGN++
Sbjct: 186 NYTTDCTIEYSTGNFT 201


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 344 FNNYKSIHLNHPPEKIVDLVFAVTKVSP 261
           FN  KSI    P EK   LV    +  P
Sbjct: 96  FNKCKSIQNEDPCEKAYQLVKCYVEFHP 123


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 258 RLMNGLLAPTTSWIVQFEG 202
           R++NG   P  +W+  F G
Sbjct: 152 RIVNGTRQPPNNWLSVFWG 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,972
Number of Sequences: 438
Number of extensions: 2034
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)