Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30759
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    25   7.7  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   7.7  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   7.7  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   7.7  

>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 412 NDIKMDNVYWEFTKPFL 362
           +D+  DNV+W+FT  F+
Sbjct: 132 DDVHHDNVHWKFTAAFV 148


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +2

Query: 209 YYYLLRTLYTQFCFFWLIIYML*CTVTTGYKIKSVLIQLNK 331
           Y+ ++  ++ + C+ WL +Y   C  T    + S ++++ K
Sbjct: 490 YFMVIEPIFKKICYLWLFLY---CPFTPFQILFSNILKMEK 527


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 605 SNTVKCHLKIEKNFDSIYLSIMRVMLSE 522
           S+ +K  LKIE N  S+ LSI+   L E
Sbjct: 202 SDDIKGKLKIENNSRSVKLSILEKALKE 229


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 418 YYNDIKMDNVYWEFTKPFL 362
           ++N IK DN  WE   P L
Sbjct: 365 FFNGIKFDNTLWELPPPRL 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,959
Number of Sequences: 5004
Number of extensions: 58528
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)