Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30759
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    28   7.1  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   7.1  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   7.1  
AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical ...    27   9.4  

>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 636  LPIEESECEIQQHRKVSFKNRK 571
            + IEESE  I++HRK+  K++K
Sbjct: 9050 ITIEESEVTIEEHRKLKKKSKK 9071


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 636  LPIEESECEIQQHRKVSFKNRK 571
            + IEESE  I++HRK+  K++K
Sbjct: 9070 ITIEESEVTIEEHRKLKKKSKK 9091


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 636  LPIEESECEIQQHRKVSFKNRK 571
            + IEESE  I++HRK+  K++K
Sbjct: 9070 ITIEESEVTIEEHRKLKKKSKK 9091


>AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical
           protein K02F6.2 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 653 FHK*IGYL*KKASAKYSNTVKCHLKIEKNF-DSIYLSIMRVMLSEQSF 513
           F+K I Y  KK     S+ +K  +K  KNF D     +  V ++  SF
Sbjct: 130 FYKMIAYFFKKTVVMKSSWLKASIKDRKNFVDDYKFQVEEVCMNSTSF 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,361,638
Number of Sequences: 27780
Number of extensions: 323499
Number of successful extensions: 778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)