Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30758
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   7.5  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.5  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 39  RKALLLHGSWC 7
           +K LL+HGSWC
Sbjct: 949 KKLLLVHGSWC 959


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 486 LLFS*RIIEIWSQGNLDIRPCGSDTKWRYLVKTIDLAN 599
           L  S R I + S  ++  R CGSD +    VK+ID  N
Sbjct: 24  LTLSTRRINLQSFQSISARNCGSDARVLDFVKSIDNDN 61


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 507  IEIWSQGNLDIRPCGSDTKWRYLVKTIDL 593
            +E +  GN +   CG ++ W Y +  +D+
Sbjct: 1496 VEYFIMGNPNQNACGEESYWYYRITFVDM 1524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,010
Number of Sequences: 5004
Number of extensions: 57351
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)