Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30757
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 357 1e-99
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 199 3e-52
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 198 5e-52
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 116 5e-27
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 67 2e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 66 5e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 54 2e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 54 3e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 52 8e-08
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.073
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.22
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.39
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.51
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 29 0.89
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.1
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.7
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.7
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 26 4.8
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 6.3
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 6.3
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.3
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 8.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.3
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 8.3
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 357 bits (877), Expect = 1e-99
Identities = 181/241 (75%), Positives = 189/241 (78%), Gaps = 1/241 (0%)
Frame = +1
Query: 1 DAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHEIVTNWV*HGE 180
DAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEH IV NW +
Sbjct: 25 DAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEK 84
Query: 181 DLASYLLQ*AACRPRGTPSPAH*GSLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 360
P P LNPK+NREKMTQI+FETFN PA YVAIQAVLSLYA
Sbjct: 85 IWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYA 144
Query: 361 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRELTDYLMKILTSAA-TRSLPP 537
SGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGR+LTDYLMKIL T S
Sbjct: 145 SGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTA 204
Query: 538 PSEIVRDIKEKLCYVALDFEQEMXXXXXXXXLEKSYELPDGQVITIGNERFRCPEALFQP 717
EIVRDIKEKLCYVALDFEQE+ LEKSYELPDGQVITIGNERFR PEALFQP
Sbjct: 205 EREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQP 264
Query: 718 S 720
S
Sbjct: 265 S 265
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 199 bits (486), Expect = 3e-52
Identities = 105/242 (43%), Positives = 148/242 (61%), Gaps = 3/242 (1%)
Frame = +1
Query: 1 DAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHEIVTNWV*HGE 180
D P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE I+ NW E
Sbjct: 29 DIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWS-DME 87
Query: 181 DLASYLL--Q*AACRPRGTPSPAH*GSLNPKANREKMTQIMFETFNTPAMYVAIQAVLSL 354
++ SY+ Q P P L N+EK+ + +ET N PA+ ++Q VL+L
Sbjct: 88 EIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLAL 147
Query: 355 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRELTDYL-MKILTSAATRSL 531
YAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GR++TDYL +++ S
Sbjct: 148 YASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVS 207
Query: 532 PPPSEIVRDIKEKLCYVALDFEQEMXXXXXXXXLEKSYELPDGQVITIGNERFRCPEALF 711
EIVR+IKEK CYVA DF E+ +Y+LPD Q IT+G E F PE LF
Sbjct: 208 SAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLF 267
Query: 712 QP 717
P
Sbjct: 268 NP 269
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 198 bits (484), Expect = 5e-52
Identities = 107/240 (44%), Positives = 146/240 (60%), Gaps = 3/240 (1%)
Frame = +1
Query: 7 PRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHEIVTNWV*HGE 180
PR FPSIVGRP R + + KD VGDEA++ R +L +KYP+E+ I+ ++ +
Sbjct: 25 PRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQ 84
Query: 181 DLASYLLQ*AACRPRGTPSPAH*GSLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 360
+ PRG +NP ANREKM + MFE + +YVAIQAVLSLYA
Sbjct: 85 LWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYA 144
Query: 361 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRELTDYLMK-ILTSAATRSLPP 537
G ++G+V+DSGDGV+H VP+YE L H + RLD+AGR+ T YL+ +L +
Sbjct: 145 QGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTA 204
Query: 538 PSEIVRDIKEKLCYVALDFEQEMXXXXXXXXLEKSYELPDGQVITIGNERFRCPEALFQP 717
E VR++KEKLCYV+ D E + L ++Y LPDG+VI +G+ER+ CPE LFQP
Sbjct: 205 DFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQP 264
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 116 bits (278), Expect = 5e-27
Identities = 79/227 (34%), Positives = 112/227 (49%), Gaps = 14/227 (6%)
Frame = +1
Query: 79 DSYVGDEAQSKRGI-LTLKYPIEHEIVTNWV*HGEDLASYLLQ*AACRPRGTPSPAH*GS 255
D ++G++A K +L YPI H + NW L + C P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 256 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 411
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 412 TVPIYEGYALPHAILRLDLAGRELTDYLMKILTSAATRSLPPPS-EIVRDIKEKLCYVAL 588
+P+ EGY + +I + LAGR++T ++ +L R+ P S + IKE+ CYV
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRD---RNEPDSSLKTAERIKEECCYVCP 249
Query: 589 DFEQEM--XXXXXXXXLEKSYELPDGQ--VITIGNERFRCPEALFQP 717
D +E L+ + E G I +G ERF PE F P
Sbjct: 250 DIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNP 296
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 67.3 bits (157), Expect = 2e-12
Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 7/218 (3%)
Frame = +1
Query: 7 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHEIVTNWV*HGED 183
P+ VF ++V R R + + + + VG++ + G ++ + P E +++NW E
Sbjct: 46 PKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLM-EQ 100
Query: 184 LASYLLQ*AACRPRGTPSPAH*GSLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 363
+ Y P NP R MT+++FE +N P++ I + S Y +
Sbjct: 101 VLDYTFLKLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHN 160
Query: 364 GR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRELTDYLMKIL----TSAATR 525
+ ++GIVL+ G+ SH +P+ G + R+ G + + YL+K+ S +
Sbjct: 161 TKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIK 220
Query: 526 SLPPPSEIVRDIKEKLCYVALDFEQEMXXXXXXXXLEK 639
LP +E+ + C+V+ D+ ++ LE+
Sbjct: 221 MLPSQAEL---LMHDHCHVSSDYTHDIAHALDRDILER 255
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 66.1 bits (154), Expect = 5e-12
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 20/134 (14%)
Frame = +1
Query: 379 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRELTDYLMKILTSAATRSLPPPSEIVRD 558
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL +++ S ++ + IV +
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVI-SYRKYNMMEETYIVNE 217
Query: 559 IKEKLCYVALDFEQEM--XXXXXXXXLEKSYELPD------------------GQVITIG 678
IKE +CYV+ +F+++M LE Y LPD QV+ +
Sbjct: 218 IKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLS 277
Query: 679 NERFRCPEALFQPS 720
NERF PE LF PS
Sbjct: 278 NERFMIPELLFSPS 291
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.0 bits (124), Expect = 2e-08
Identities = 29/92 (31%), Positives = 43/92 (46%)
Frame = +1
Query: 259 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYA 438
NP NR K + MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+
Sbjct: 109 NPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFV 168
Query: 439 LPHAILRLDLAGRELTDYLMKILTSAATRSLP 534
L +G + D L + L +P
Sbjct: 169 LQKGYQVQHFSGNAINDILAQTLRDKNFEVMP 200
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 182 IWHHTFYNELRVAPEEHPVLLTE 250
+W + +L+ P EHP+L+TE
Sbjct: 83 LWRYGLEQQLKTNPLEHPILITE 105
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 53.6 bits (123), Expect = 3e-08
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 2/174 (1%)
Frame = +1
Query: 40 PRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHEIVTNWV*HGEDLASYLLQ*AA 213
P + GV + ++ YV DE Q I + +K + I+ +W L +
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 214 CRPRGTPSPAH*GSLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 393
P S NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 394 GDGVSHTVPIYEGYALPHAILRLDLAGRELTDYLMKILTSAATRSLPPPSEIVR 555
G + P+ +G + I + LAG + + ++ L + PP I R
Sbjct: 157 GSDNASVTPVVDGLIIRKGIFKQSLAG-DFLNANIEQLFNTMNIEFPPHYRIAR 209
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +1
Query: 637 KSYELPDGQVITIGNERFRCPEALFQPSF 723
K +E PDG G ERFR E LF PSF
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSF 307
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 52.0 bits (119), Expect = 8e-08
Identities = 27/79 (34%), Positives = 41/79 (51%)
Frame = +1
Query: 271 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 450
+RE TQ FE P +A + ++ LYA G G+V+D G + PI +G + A
Sbjct: 161 DRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTA 220
Query: 451 ILRLDLAGRELTDYLMKIL 507
+L L GR +T +L +L
Sbjct: 221 TQQLPLGGRYMTQHLQNLL 239
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.073
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 320 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 454
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +2
Query: 317 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 454
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +2
Query: 317 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 454
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 317 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 454
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 30.7 bits (66), Expect = 0.22
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 7 PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHEI 153
PRA F ++ P H G+++ M KD G+E S +G + + P E+EI
Sbjct: 506 PRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP-ENEI 551
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.39
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 296 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 454
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.7 bits (61), Expect = 0.89
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 296 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 454
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +2
Query: 308 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 454
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 341 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 445
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 28.7 bits (61), Expect = 0.89
Identities = 21/88 (23%), Positives = 41/88 (46%)
Frame = +3
Query: 249 RLPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLR 428
R PQ + E++ D++R++ +RH RR P +A + R H + R R ++
Sbjct: 1427 RTPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR---QNGNVN 1480
Query: 429 RIRTPPRHPASGLSRSRAHRLPHEDPHE 512
R + ++ +SR R+ H ++
Sbjct: 1481 RNPRVSNNNSTNVSRERSSEANHRTSND 1508
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 103 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 14
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.1
Identities = 33/131 (25%), Positives = 44/131 (33%)
Frame = +2
Query: 317 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVXXXXXXX 496
PP PS P P +PP A ++P P P+ P P P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPP-----SAPIAP-PLPAGMPAAPPLPPAAPAPPPAPAPAPA 485
Query: 497 XXXXXXXLLVHYHRRAKSFVTSRRSCATSLLTSSRKWPALHPAAPSRSLTNFPTVRSSLS 676
L RA + R S LL SRK A P+ S +N P +
Sbjct: 486 APVASIAELPQQDGRANLMASIRASGGMDLL-KSRKVSA-SPSVASTKTSNPPVEAPPSN 543
Query: 677 ETKDSVAQRLS 709
D++A L+
Sbjct: 544 NLMDALASALN 554
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 341 PCSRCTRPVVPPVSCWTPATVSPTPCPST 427
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 317 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 424
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 524 VHYHRRAKSFVTSRRSCATSLLTSSRKWPALHPAAPSRSLTNFPTVRSSLSETKDSVAQR 703
+H + +F +R S A SS + +P+AP+R PTV++S S A+
Sbjct: 327 LHSKSPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEP 384
Query: 704 LSSNP 718
++ P
Sbjct: 385 VAYQP 389
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 672 SDDLTVGKFVRLLEGAAGCSAGHFLLEVKSDVAQLLL 562
+D VG+ L+ GAAG S GHF EV + + +LL
Sbjct: 350 ADSTFVGRAASLV-GAAGQSQGHF-TEVLNGIGTILL 384
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +3
Query: 357 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRAHRLPHEDPH 509
R RS HR+ G RR P+R HL R RH + R R H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 132 FEGQDTSFALCLISYIRVLLSHTDHHA 52
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 563 RRSCATSLLTSSRKWPALHPAAPSRS-LTNFPTVRSSLSETKDSVAQRLSSNPRS 724
R++ A + +S+ + P++P S L+ FP++ ++SE +Q+ +S+P S
Sbjct: 276 RKTFAKNPTKNSKPAGQVIPSSPFTSTLSRFPSLEGAVSEISLRDSQKHNSHPNS 330
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.3
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 335 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPSCVWT*PV 475
S+ S T P PP + T PA SP P + H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPV 948
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 9 SRRVPLDRGKAPPSGRDGRYGTEGLLCRR*GTEQKRYPDPQIPHR 143
S +VP R PP R +Y E G Q+ + P++ +R
Sbjct: 207 SLQVPPSRNVPPPVTRPNQYNPEPNFSLSSGYPQQHFSQPELQNR 251
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 657 VGKFVRLLEGAAGCSAGHFLLEVKSDVAQLLLDVTN 550
+GK RLLE AAG F+ KSD+ D N
Sbjct: 853 LGKPERLLESAAGQFIISFITSEKSDLLNTHTDFVN 888
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,312,982
Number of Sequences: 5004
Number of extensions: 73897
Number of successful extensions: 291
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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