Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30756
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46669-4|AAQ65208.1|  557|Caenorhabditis elegans Hypothetical pr...    28   2.0  
AF039046-6|AAB94216.1|   66|Caenorhabditis elegans Caenacin (cae...    26   6.1  
Z82279-2|CAB05260.2|  256|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AY151209-1|AAN72826.1|  256|Caenorhabditis elegans COG-1A protein.     26   8.1  

>U46669-4|AAQ65208.1|  557|Caenorhabditis elegans Hypothetical
           protein C41G11.4c protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 286 CTRKYYFANKIFFRCTMFCYYLRRFAP 206
           C+ KYYF    +   ++F YY+ +F P
Sbjct: 521 CSFKYYFITNNYSSFSIFSYYIVQFLP 547


>AF039046-6|AAB94216.1|   66|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 4 protein.
          Length = 66

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 245 LHYVLLLSSPIRALSSVRWGNLPF 174
           L Y+L+L   I A+SS +WG  P+
Sbjct: 2   LRYILVLLVAIIAMSSAQWGYGPY 25


>Z82279-2|CAB05260.2|  256|Caenorhabditis elegans Hypothetical
           protein R03C1.3a protein.
          Length = 256

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 149 NISLYLVERKEGSPTARSSRRESA 220
           +IS  L+E+KE SP+  SS  +SA
Sbjct: 29  SISNLLLEKKESSPSGSSSEDDSA 52


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 137  CGGRNISLYLVERKEGSPTARSSR 208
            CGG   S  + E+K G P+  SS+
Sbjct: 1373 CGGGKASAIVAEKKSGKPSTFSSK 1396


>AY151209-1|AAN72826.1|  256|Caenorhabditis elegans COG-1A protein.
          Length = 256

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 149 NISLYLVERKEGSPTARSSRRESA 220
           +IS  L+E+KE SP+  SS  +SA
Sbjct: 29  SISNLLLEKKESSPSGSSSEDDSA 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,243,298
Number of Sequences: 27780
Number of extensions: 156106
Number of successful extensions: 427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)