BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30756 (343 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g59730.1 68416.m06664 receptor lectin kinase, putative simila... 29 0.61 At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr... 29 1.1 At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kin... 28 1.9 At2g16960.1 68415.m01954 importin beta-2 subunit family protein ... 27 4.3 At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 26 5.7 At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 26 5.7 At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr... 26 7.6 At5g15360.1 68418.m01798 hypothetical protein 26 7.6 At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containi... 26 7.6 At4g13620.1 68417.m02120 AP2 domain-containing transcription fac... 26 7.6 At3g11380.1 68416.m01384 pentatricopeptide (PPR) repeat-containi... 26 7.6 At1g63810.1 68414.m07221 nucleolar RNA-associated family protein... 26 7.6 At1g30500.2 68414.m03729 CCAAT-binding transcription factor (CBF... 26 7.6 At1g30500.1 68414.m03728 CCAAT-binding transcription factor (CBF... 26 7.6 At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 25 10.0 At2g14850.1 68415.m01687 expressed protein 25 10.0 >At3g59730.1 68416.m06664 receptor lectin kinase, putative similar to receptor lectin kinase 3 [Arabidopsis thaliana] gi|4100060|gb|AAD00733; contains pfam domains PF00139: Legume lectins beta domain and PF00069: Protein kinase domain Length = 523 Score = 29.5 bits (63), Expect = 0.61 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = -3 Query: 257 NIFPLHY-VLLLSSPIRALSSVRWGNLPFFPPSKEKCSDRHNRHRA*CYSIS 105 +I LHY VL+ + P + +G +P PP +K SDR A C +++ Sbjct: 235 SIRALHYMVLVYTYPEAVYQPLEFGRVPTLPPYPKKPSDRLRTVLAVCLTLA 286 >At1g71830.1 68414.m08301 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain Length = 625 Score = 28.7 bits (61), Expect = 1.1 Identities = 11/32 (34%), Positives = 15/32 (46%) Frame = +3 Query: 87 GSNTSAANAIALGAMAVVAVGTFLFTWWKERK 182 G + A +A GA + A F WW+ RK Sbjct: 235 GITGAIAGGVAAGAALLFAAPAIAFAWWRRRK 266 >At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kinase 2 (SERK2) nearly identical to somatic embryogenesis receptor-like kinase 2 [Arabidopsis thaliana] GI:14573457; contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain; identical to cDNA somatic embryogenesis receptor-like kinase 2 (SERK2) GI:14573456 Length = 628 Score = 27.9 bits (59), Expect = 1.9 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = +3 Query: 105 ANAIALGAMAVVAVGTFLFTWWKERK 182 A +A GA + A F WW+ RK Sbjct: 244 AGGVAAGAALLFAAPALAFAWWRRRK 269 >At2g16960.1 68415.m01954 importin beta-2 subunit family protein contains weak hit to Pfam PF02985: HEAT repeat (4 copies); contains weak hit to Pfam PF03130: PBS lyase HEAT-like repeat (2 copies); supported by tandem duplication of importin beta family protein (TIGR_Ath1:At2g16950) [Arabidopsis thaliana]; similar to Importin beta-2 subunit (Karyopherin beta-2 subunit) (Transportin) (M9 region interaction protein) (MIP) (Swiss-Prot:Q92973) [Homo sapiens] Length = 547 Score = 26.6 bits (56), Expect = 4.3 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +3 Query: 51 CHFAMTKNSNSQGSNTSAAN--AIALGAMAV 137 CH +TK++N G N SAAN A+G +AV Sbjct: 336 CH--LTKSANFSGENLSAANNACKAIGELAV 364 >At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S ribosomal protein S27A (RPS27aC) identical to GI:166933, GI:166934 Length = 157 Score = 26.2 bits (55), Expect = 5.7 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 223 LRRFAP*APCGGGTFLSFH 167 LR+ P A CG GTF++ H Sbjct: 117 LRKECPNATCGAGTFMASH 135 >At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S ribosomal protein S27A (RPS27aB) identical to GI:166936 Length = 157 Score = 26.2 bits (55), Expect = 5.7 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 223 LRRFAP*APCGGGTFLSFH 167 LR+ P A CG GTF++ H Sbjct: 117 LRKECPNATCGAGTFMASH 135 >At5g16000.1 68418.m01871 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain Length = 638 Score = 25.8 bits (54), Expect = 7.6 Identities = 8/33 (24%), Positives = 19/33 (57%) Frame = +3 Query: 81 SQGSNTSAANAIALGAMAVVAVGTFLFTWWKER 179 S+ + A ++G ++++ + LF WW++R Sbjct: 242 SRNHKMAIAVGSSVGTVSLIFIAVGLFLWWRQR 274 >At5g15360.1 68418.m01798 hypothetical protein Length = 253 Score = 25.8 bits (54), Expect = 7.6 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +3 Query: 27 RFSLPQINCHFAMTKNSNSQG---SNTSAANAIALGAMAVVAVGTF 155 RF LPQI C F+ + + S ++ +A+ L A AVV T+ Sbjct: 185 RFGLPQIACAFSNSSHLQDMSHLFSALASNSAVDLSARAVVERTTY 230 >At4g22760.1 68417.m03286 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 889 Score = 25.8 bits (54), Expect = 7.6 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = +3 Query: 57 FAMTKNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWWKERKVPP 191 F M N N + + + +A + G + LFT E+K+PP Sbjct: 655 FKMFSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPP 699 >At4g13620.1 68417.m02120 AP2 domain-containing transcription factor, putative similar to AP2 domain containing protein RAP2.4 [Arabidopsis thaliana] GI:2281633; contains Pfam profile PF00847: AP2 domain Length = 388 Score = 25.8 bits (54), Expect = 7.6 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -3 Query: 230 LLSSPIRALSSVRWGNLPFFPPSKEKCSDRHNRH 129 LL S I+ +SS + N P PP K ++ N H Sbjct: 306 LLESKIQQISSSQVSNSPSPPPPKVGTPEQKNHH 339 >At3g11380.1 68416.m01384 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 541 Score = 25.8 bits (54), Expect = 7.6 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -2 Query: 324 IYNIILLDSKHKRVHVSIILRTKYFSA 244 + NI+L D KHK + I+ R A Sbjct: 502 VVNILLCDMKHKNIEPDIVTRNNVLRA 528 >At1g63810.1 68414.m07221 nucleolar RNA-associated family protein / Nrap family protein contains Pfam profile PF03813: Nrap protein; similar to nucleolar RNA-associated protein alpha (GI:18539461) [Mus musculus] Length = 1053 Score = 25.8 bits (54), Expect = 7.6 Identities = 9/16 (56%), Positives = 13/16 (81%) Frame = +1 Query: 142 RSEHFSLLGGKKGRFP 189 RS+H S++ G +GRFP Sbjct: 726 RSQHASMINGLQGRFP 741 >At1g30500.2 68414.m03729 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) Length = 190 Score = 25.8 bits (54), Expect = 7.6 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +2 Query: 113 YSTRRDGGCGGRNISLYLVERKEGSPTARSSRRESAKIVAEHSA 244 ++ RR GCGGR +L +KE SS E + + A SA Sbjct: 143 HAIRRPRGCGGR----FLNAKKEDEHHEDSSHEEKSNLSAGKSA 182 >At1g30500.1 68414.m03728 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) Length = 186 Score = 25.8 bits (54), Expect = 7.6 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +2 Query: 113 YSTRRDGGCGGRNISLYLVERKEGSPTARSSRRESAKIVAEHSA 244 ++ RR GCGGR +L +KE SS E + + A SA Sbjct: 139 HAIRRPRGCGGR----FLNAKKEDEHHEDSSHEEKSNLSAGKSA 178 >At5g07760.1 68418.m00888 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 853 Score = 25.4 bits (53), Expect = 10.0 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = -2 Query: 159 REMFRPPQPPSRLVL*H*QRMCCC 88 R + RPP PP L + + +CCC Sbjct: 65 RVLPRPPPPPPPLPMFDAEVLCCC 88 >At2g14850.1 68415.m01687 expressed protein Length = 291 Score = 25.4 bits (53), Expect = 10.0 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = -3 Query: 224 SSPIRALSSVRWGNLPFFPPSKEKCSDRHNRHR 126 S P R +G+ P FPPS KC R R R Sbjct: 80 SPPPRYPKKSLYGD-PVFPPSPRKCRSRKFRDR 111 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,596,843 Number of Sequences: 28952 Number of extensions: 140849 Number of successful extensions: 398 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 391 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 397 length of database: 12,070,560 effective HSP length: 72 effective length of database: 9,986,016 effective search space used: 409426656 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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