Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30755
         (740 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.1  
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    23   3.4  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   4.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   4.5  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 443 DAVFVNKTKSSQKVDSRLSDEDTQLKI 523
           DAV V++ ++++KVD  + +E   +KI
Sbjct: 466 DAVCVSQLRNAKKVDEAILEERPDVKI 492


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 604 PQDENSIAHFLMNLVQREENEDRAFFTSITSAVSSLSERSKF 729
           P +EN + +     V R E       T +T+ V   SER  F
Sbjct: 479 PSEENPLINVTWKPVTRNEMNFLDIGTKLTTGVDPDSERMAF 520


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 428 PRRVCTASPGSSPSSVT*RKRLVCSSIFLTS 336
           PRR  ++ P +  +S   R+ ++ SS+FL S
Sbjct: 121 PRREWSSPPDARAASDAARRGVLYSSVFLGS 151


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 428 PRRVCTASPGSSPSSVT*RKRLVCSSIFLTS 336
           PRR  ++ P +  +S   R+ ++ SS+FL S
Sbjct: 277 PRREWSSPPDARAASDAARRGVLYSSVFLGS 307


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,799
Number of Sequences: 336
Number of extensions: 3461
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)