Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30755
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    29   0.70 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.70 
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    28   1.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.7  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    27   3.7  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   4.9  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   6.5  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   6.5  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    25   8.6  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   8.6  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    25   8.6  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    25   8.6  

>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -3

Query: 222 ISCPTSIFFHELSRSILWLHSSLVQHFQNPTS*SLINYC 106
           +SC  SIFFH ++   L+L +  +   Q  T+ ++I YC
Sbjct: 135 VSCFASIFFHAIACYALYLLTKSIFSNQKMTAYTVIFYC 173


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 272 RSPPKPQPVVLVPILCTSPVP 210
           +SPP P P V+VP    +P+P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIP 750


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 519 FSCVSSSESRLSTFWDDLVLLTNTASRNSKASACMYGFTRFLPI 388
           +SC +     LS   D  V+  NT+    ++    +GFTRF+ +
Sbjct: 135 YSCCAQFALSLSNVQDPTVMQINTSHHRFRSEVKDWGFTRFVDL 178


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 607 QDENSIAHFLMNLVQREENEDRAFFTSITSAVSSLSERSKF 729
           Q E  I  F    V+   +E+ A    +  AVS  + RSKF
Sbjct: 429 QTEKEITDFCQKGVEESASEEEAINWKLLMAVSKRASRSKF 469


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 529 EWLNEVYVDES-AVEDPPPKKPKLEYPQDENS 621
           EW+    +D S  +E PPP+KPK  + + ++S
Sbjct: 65  EWITIDNIDLSKGIEYPPPEKPKKAHGKGKSS 96


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 210  TSIFFHELSRSILWLHSSLVQHFQNPTS 127
            TS   +E S  I  LHS +V HFQN ++
Sbjct: 926  TSSSSNETSHLIQELHSLIVDHFQNDSN 953


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 263 EEICEVLDPNFHRVNNKHKNKSVLLMSKKWTNIR 364
           EE+C+++D        KH++K ++L   K TN++
Sbjct: 65  EELCQLIDEQNAHNEAKHQSKEIML--PKETNVK 96


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 287 DLAPHRSPPKPQPVVLVPILCTSPVPQAFSFTN 189
           DLA H  PPK     L+     SP+ QA    N
Sbjct: 656 DLAQHLLPPKTNTEGLMHAQSVSPITQAMKSAN 688


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
 Frame = -2

Query: 493 STVYFLGRLSFVNEHSIKKLQSLGV--YVRLH---PVPPHPQ 383
           +  Y L RLS ++ HS++K +S  V  +  +H   P+P  P+
Sbjct: 3   NVTYRLLRLSLISSHSLRKSRSFDVKNFANIHFFIPLPNTPK 44


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 541 EVYVDESAVEDPPPKKP-KLEYPQDENSIAHFLMNLVQREENEDRAFFTSITSAV 702
           +V V ++  E+    +P KLE P +ENS         Q  E +D++    I S V
Sbjct: 716 DVVVPDTTDEEVITSEPVKLEQPINENSNVEEAEKDYQPSEKDDKSLIGGILSTV 770


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/62 (24%), Positives = 31/62 (50%)
 Frame = +1

Query: 514 TEDSIEWLNEVYVDESAVEDPPPKKPKLEYPQDENSIAHFLMNLVQREENEDRAFFTSIT 693
           T++ ++W+   Y+D+    D  P+     +  +  + A+  ++L     N+D  FF+S  
Sbjct: 161 TKELVDWVKAEYLDKGLGNDVLPRSKVENFFGEVPTSANRCIDLTDVRGNDD--FFSSDL 218

Query: 694 SA 699
           SA
Sbjct: 219 SA 220


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 568 EDPPPKKPKLEYPQDENS 621
           E+P  KKPK+E P  +N+
Sbjct: 15  ENPDEKKPKVEEPDSQNN 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,468
Number of Sequences: 5004
Number of extensions: 57798
Number of successful extensions: 213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)