Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30755
(740 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 31 1.3
10_08_0471 + 18153024-18153026,18153310-18153429,18153826-18153957 30 2.2
08_02_1414 + 26901937-26902597,26903361-26903397,26903733-269037... 30 2.2
09_06_0051 - 20498261-20498362,20498491-20498612,20498694-204987... 29 2.9
09_02_0082 - 4060018-4061604 29 5.1
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805... 29 5.1
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350... 28 6.8
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 278 PHRSPPKPQPVVLVPILCTSPVPQA 204
P +SPP P PV+L P SP P A
Sbjct: 1148 PEKSPPPPAPVILPPPPIKSPPPPA 1172
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 278 PHRSPPKPQPVVLVPILCTSPVPQA 204
P +SPP P PV+L P SP P A
Sbjct: 1180 PVKSPPPPAPVILPPPPVKSPPPPA 1204
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 278 PHRSPPKPQPVVLVPILCTSPVPQA 204
P +SPP P PV+L P SP P A
Sbjct: 1212 PVKSPPPPAPVILPPPPVKSPPPPA 1236
>10_08_0471 + 18153024-18153026,18153310-18153429,18153826-18153957
Length = 84
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 550 VDESAVEDPPPKKPKLEYPQDENSIAHFLMNLVQREEN--EDRAF 678
VDE +DP KKPKLE P+ + +A + +Q EE ++R F
Sbjct: 29 VDEDGEKDP--KKPKLEAPKKKAKLAAKRIRKMQEEEKRLQEREF 71
>08_02_1414 +
26901937-26902597,26903361-26903397,26903733-26903791,
26904198-26904388,26904591-26904680,26904833-26904926,
26905008-26905159,26905250-26905347,26905400-26905459,
26905460-26905598,26905686-26905784,26905883-26906018,
26906352-26906413
Length = 625
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Frame = +1
Query: 511 ATEDSIEWLNEVYVDESAVEDPPPKK-------PKL--EYPQDENSIAHFLMNLVQREEN 663
+TE S + VY+ E A+ P PK+ PKL +YP D L + +E+
Sbjct: 514 STESSSDSKGLVYLFEEALNSPDPKEGLRTLIDPKLGEDYPIDSILKLTQLAKVCTQEDP 573
Query: 664 EDRAFFTSITSAVSSLSERSKF 729
+ R S+ A+ +LS S+F
Sbjct: 574 KLRPSMRSVVVALMTLSSTSEF 595
>09_06_0051 -
20498261-20498362,20498491-20498612,20498694-20498741,
20498832-20498934,20499038-20499112,20499362-20499478,
20499591-20499656,20500527-20500632,20501196-20501275,
20501372-20501443
Length = 296
Score = 29.5 bits (63), Expect = 2.9
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = +2
Query: 218 EMYRV*EQVRQAEAWEEICEVLDPNFHRVNNKHKNKSVLLMSKKWTNIRDAYVKSLRMGR 397
E+ R+ E +R A E+ E L N + ++ +K+ + + ++ + G
Sbjct: 71 EVDRLIEMLRDANPREKDYEELAENVMNIVDRLVHKTDEKIEQSTDVLKAIISPVMHEGE 130
Query: 398 NRVKPYIHAEALEFLDAVFVNKTKSSQKVDSRLSDEDTQLK 520
N P EAL+ ++ N+ K Q + LS+ + QL+
Sbjct: 131 NATWPPRDPEALKLMEKEISNREKEGQLDEGFLSEVNAQLR 171
>09_02_0082 - 4060018-4061604
Length = 528
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 281 APHRSPPKPQPVVLVPI-LCTSPVPQAFSFT 192
A H +PP+P P V VP+ L SP +SF+
Sbjct: 107 AGHSTPPEPVPSVPVPLGLTMSPTTAHYSFS 137
>04_04_1401 +
33279092-33279286,33280223-33280306,33280459-33280524,
33280945-33281028,33281181-33281246,33281719-33281802,
33281955-33282020,33282323-33282388,33282667-33282726,
33282805-33282888,33282968-33283111,33283552-33283586,
33283694-33283746,33283828-33283928,33284516-33284974
Length = 548
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 281 APHRSPPKPQPVVLVPILCTSPVPQAF--SFTN*ADQ 177
+P SP P P P+L T P PQAF ++T DQ
Sbjct: 31 SPPSSPSPPSPPSPQPLLPTLPSPQAFVDAYTGYEDQ 67
>11_04_0281 +
15733505-15733647,15734366-15734443,15734835-15735077,
15735868-15736012,15736234-15736293,15736376-15736471,
15736651-15737067,15737824-15737964,15738043-15738213,
15738394-15738651,15738741-15738889,15739060-15739557,
15740147-15740420,15740631-15740696,15740891-15741057,
15741413-15741497,15741673-15741732
Length = 1016
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 120 VIRMSDSESVVPAKNEAIELIGLVRERKCLWD 215
VIR+S ++V +A E+ L+ + C+WD
Sbjct: 197 VIRISKKDTVGELHKKACEVFDLIPDEVCIWD 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,335,110
Number of Sequences: 37544
Number of extensions: 374521
Number of successful extensions: 1309
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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